FC931729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 2.815e-54 Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661 +GNGTS+ISLI+PP++Q+S + + L D G A NIKS+ +++V AI S +Q+L + ++PPNGL+LY G + +D K EK++ EP R IN + +LC+N F+T L ++L+ DKFGFI+MDGNG+LFGTL GN RE+LHKF VDLP+ Sbjct: 25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILHKFDVDLPK 176 HSP 2 Score: 61.2326 bits (147), Expect = 2.815e-54 Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1 Query: 658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELA 753 KKHGRGGQSALRFARLR+EKRHNY++K AE+A Sbjct: 176 KKHGRGGQSALRFARLRLEKRHNYMKKVAEVA 207
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 4.149e-29 Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNGLV + G I T + + T EP PI +Y CD++FHT+ L +L+ + +G IV+D G L+G EV+ +P Sbjct: 27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVENVQSQVP 175 HSP 2 Score: 29.6462 bits (65), Expect = 4.149e-29 Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 1 Query: 640 VQC*PSKKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759 VQ KH +GGQS+ RF RL + + +K E+A++ Sbjct: 170 VQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGEIANN 209
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 5.804e-28 Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2 Query: 212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 G GT +ISL +PP Q+S V L DE+ T+SNIKS+ R++VL AI S RLK Y PPNG V + G I T + + T EP PI +Y CD++FH + L +LE + +G IV+D G L+G EV+ +P Sbjct: 27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVVDNVQSQVP 175 HSP 2 Score: 29.6462 bits (65), Expect = 5.804e-28 Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 1 Query: 640 VQC*PSKKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759 VQ KH +GGQS+ RF RL + + +K E+A++ Sbjct: 170 VQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGEIANN 209
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.677e-27 Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EVL + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVP 174 HSP 2 Score: 29.261 bits (64), Expect = 3.677e-27 Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELAH 756 GGQSA R+ R+R ++ H ++++ E A+ Sbjct: 180 GGQSARRYERIREQETHEFMKRIGEHAN 207
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 8.112e-27 Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + + ++P Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVP 171 HSP 2 Score: 29.261 bits (64), Expect = 8.112e-27 Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELAH 756 GGQSA R+ R+R ++ H ++++ E A+ Sbjct: 177 GGQSARRYERIREQETHEFMKRIGEHAN 204
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.056e-26 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G E+L + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVP 174 HSP 2 Score: 29.261 bits (64), Expect = 1.056e-26 Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELAH 756 GGQSA R+ R+R ++ H ++++ E A+ Sbjct: 180 GGQSARRYERIREQETHEFMKRIGEHAN 207
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.056e-26 Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY K P NGL L+ G + +G P P+ LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P Sbjct: 22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVP 171 HSP 2 Score: 30.4166 bits (67), Expect = 1.056e-26 Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELA 753 GGQSA R+ R+R ++ H ++++ AE A Sbjct: 177 GGQSARRYERIREQETHEFMKRIAEHA 203
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 1.374e-26 Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG T ++SL +P +++V + L +E+GTA NIKS+ R++VLGA+ A Q LKLY + P GL L+ G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P Sbjct: 22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVP 171 HSP 2 Score: 30.0314 bits (66), Expect = 1.374e-26 Identity = 12/29 (41.38%), Postives = 20/29 (68.97%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELAHS 759 GGQSA R+ R+R ++ H ++++ E A S Sbjct: 177 GGQSARRYERIREQEAHEFMKRIGEHASS 205
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 110.923 bits (276), Expect = 2.328e-26 Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658 RG GT +ISL +P +S+V + L +E+ TA NIKS+ R++VLGA+ A Q LKLY + P NGL L+ G + +G P P+N LY CD F T+ L E+L + +G I ++ N G L G EVL + + ++P Sbjct: 25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVP 174 HSP 2 Score: 29.261 bits (64), Expect = 2.328e-26 Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1 Query: 673 GGQSALRFARLRMEKRHNYVRKTAELAH 756 GGQSA R+ R+R ++ H ++++ E A+ Sbjct: 180 GGQSARRYERIREQETHEFMKRIGEHAN 207
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 3.947e-26 Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2 Query: 209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634 +G GT +I+L +PP ++ V+ L E ASNIKS+ R +VL I + RLK + K P NG+V+ +G +V +GKEK +T EP P+ Y CD+KF+ D L E+L +G IV+D G L G EVL Sbjct: 20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160 HSP 2 Score: 34.6538 bits (78), Expect = 3.947e-26 Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 1 Query: 661 KHGRGGQSALRFARLRMEKRHNYVRKTAELA 753 KH +GGQS++RF RLR H + +K E+A Sbjct: 170 KHRQGGQSSVRFERLREIAIHEFYKKVGEMA 200 The following BLAST results are available for this feature:
BLAST of FC931729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931729 ID=FC931729; Name=FC931729; organism=Citrus clementina; type=EST; length=771bpback to top |