FC931729

Overview
NameFC931729
Unique NameFC931729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.815e-54
Identity = 79/152 (51.97%), Postives = 112/152 (73.68%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGK-EKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPR 661
            +GNGTS+ISLI+PP++Q+S + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP R IN + +LC+N F+T  L ++L+  DKFGFI+MDGNG+LFGTL GN RE+LHKF VDLP+
Sbjct:   25 KGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREILHKFDVDLPK 176          

HSP 2 Score: 61.2326 bits (147), Expect = 2.815e-54
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 1
Query:  658 KKHGRGGQSALRFARLRMEKRHNYVRKTAELA 753
            KKHGRGGQSALRFARLR+EKRHNY++K AE+A
Sbjct:  176 KKHGRGGQSALRFARLRLEKRHNYMKKVAEVA 207          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.149e-29
Identity = 62/149 (41.61%), Postives = 85/149 (57.05%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNGLV + G I T   + +  T   EP  PI   +Y CD++FHT+ L  +L+  + +G IV+D      G L+G   EV+      +P
Sbjct:   27 GRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVVENVQSQVP 175          

HSP 2 Score: 29.6462 bits (65), Expect = 4.149e-29
Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  640 VQC*PSKKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759
            VQ     KH +GGQS+ RF RL     + + +K  E+A++
Sbjct:  170 VQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGEIANN 209          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 5.804e-28
Identity = 61/149 (40.94%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  212 GNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            G GT +ISL +PP  Q+S V   L DE+ T+SNIKS+  R++VL AI S   RLK Y   PPNG V + G I T   + +  T   EP  PI   +Y CD++FH + L  +LE  + +G IV+D      G L+G   EV+      +P
Sbjct:   27 GRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVVDNVQSQVP 175          

HSP 2 Score: 29.6462 bits (65), Expect = 5.804e-28
Identity = 15/40 (37.50%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  640 VQC*PSKKHGRGGQSALRFARLRMEKRHNYVRKTAELAHS 759
            VQ     KH +GGQS+ RF RL     + + +K  E+A++
Sbjct:  170 VQSQVPSKHHQGGQSSRRFERLIEIAANEFFKKVGEIANN 209          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.677e-27
Identity = 59/150 (39.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EVL + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVP 174          

HSP 2 Score: 29.261 bits (64), Expect = 3.677e-27
Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELAH 756
            GGQSA R+ R+R ++ H ++++  E A+
Sbjct:  180 GGQSARRYERIREQETHEFMKRIGEHAN 207          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 8.112e-27
Identity = 56/150 (37.33%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+ + + ++P
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVP 171          

HSP 2 Score: 29.261 bits (64), Expect = 8.112e-27
Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELAH 756
            GGQSA R+ R+R ++ H ++++  E A+
Sbjct:  177 GGQSARRYERIREQETHEFMKRIGEHAN 204          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.056e-26
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   E+L + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVP 174          

HSP 2 Score: 29.261 bits (64), Expect = 1.056e-26
Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELAH 756
            GGQSA R+ R+R ++ H ++++  E A+
Sbjct:  180 GGQSARRYERIREQETHEFMKRIGEHAN 207          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.056e-26
Identity = 56/150 (37.33%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY K P NGL L+ G +   +G          P  P+   LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P
Sbjct:   22 RGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVP 171          

HSP 2 Score: 30.4166 bits (67), Expect = 1.056e-26
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELA 753
            GGQSA R+ R+R ++ H ++++ AE A
Sbjct:  177 GGQSARRYERIREQETHEFMKRIAEHA 203          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.374e-26
Identity = 55/150 (36.67%), Postives = 82/150 (54.67%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VLGA+  A Q LKLY + P  GL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P
Sbjct:   22 RGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVP 171          

HSP 2 Score: 30.0314 bits (66), Expect = 1.374e-26
Identity = 12/29 (41.38%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELAHS 759
            GGQSA R+ R+R ++ H ++++  E A S
Sbjct:  177 GGQSARRYERIREQEAHEFMKRIGEHASS 205          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.328e-26
Identity = 58/150 (38.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VLGA+  A Q LKLY + P NGL L+ G +   +G          P  P+N  LY CD  F T+ L E+L   + +G I ++ N    G L G   EVL + + ++P
Sbjct:   25 RGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVP 174          

HSP 2 Score: 29.261 bits (64), Expect = 2.328e-26
Identity = 11/28 (39.29%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  673 GGQSALRFARLRMEKRHNYVRKTAELAH 756
            GGQSA R+ R+R ++ H ++++  E A+
Sbjct:  180 GGQSARRYERIREQETHEFMKRIGEHAN 207          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.947e-26
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 634
            +G GT +I+L +PP   ++ V+  L  E   ASNIKS+  R +VL  I +   RLK + K P NG+V+ +G +V  +GKEK +T   EP  P+    Y CD+KF+ D L E+L     +G IV+D      G L G   EVL
Sbjct:   20 KGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160          

HSP 2 Score: 34.6538 bits (78), Expect = 3.947e-26
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  661 KHGRGGQSALRFARLRMEKRHNYVRKTAELA 753
            KH +GGQS++RF RLR    H + +K  E+A
Sbjct:  170 KHRQGGQSSVRFERLREIAIHEFYKKVGEMA 200          
The following BLAST results are available for this feature:
BLAST of FC931729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST2.815e-5451.97Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO4.149e-2941.61Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC5.804e-2840.94Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_PYRAB3.677e-2739.33Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRKO8.112e-2737.33Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO1.056e-2638.67Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THEON1.056e-2637.33Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_THESM1.374e-2636.67Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRFU2.328e-2638.67Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_ARCFU3.947e-2640.14Peptide chain release factor subunit 1 OS=Archaeog... [more]

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Properties
Property NameValue
Genbank descriptionC34108C12EF PostHarvP1 Citrus clementina cDNA clone C34108C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931729 ID=FC931729; Name=FC931729; organism=Citrus clementina; type=EST; length=771bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
GACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAGCTGAACTT
GCACACAGTTTTATATCAATC
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