FC931729

Overview
NameFC931729
Unique NameFC931729
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length771
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:13..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_AERPE (Peptide chain release factor subunit 1 OS=Aeropyrum pernix GN=prf1 PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.028e-15
Identity = 49/146 (33.56%), Postives = 75/146 (51.37%), Query Frame = 2
Query:  221 TSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            T ++SL +PP   +S V  +L  E+    NIK +  RQ+V  A+++A  RL++    PPNGLVL+ G    D    K     F P  PI    Y  D +F TD L +++E ++  G I+++ +    G L G   EVL +    +P
Sbjct:   32 TVLLSLYIPPGRPLSDVMTLLRQEYSITDNIKLKRTRQAVKRALSAAMDRLQMLTSTPPNGLVLFCG---EDMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIIIVERDQATIGLLKGARLEVLKELEGFVP 174          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_SULSO (Peptide chain release factor subunit 1 OS=Sulfolobus solfataricus GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.338e-14
Identity = 46/147 (31.29%), Postives = 72/147 (48.98%), Query Frame = 2
Query:  221 TSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTG-TIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            T ++SL +PP   +  V  +L  E+  A NIK +  R +VL AI +A  RL    K+  NGLVL+ G    T+D K       F P   +    Y  D +FH + L +++E    +G I+++ +    G L G   E+L +    +P
Sbjct:   28 TVLLSLYIPPGRPIPDVVNLLRQEYSIAQNIKLKRTRDAVLSAIGAAIDRLNKIPKIDGNGLVLFCGENFDTEDFK----CFMFSPPDKVPLFFYRTDKEFHLEFLEDMVEDTAVYGLIIVERDEATIGLLKGARIEILEEIEGFVP 170          

HSP 2 Score: 28.4906 bits (62), Expect = 1.338e-14
Identity = 12/34 (35.29%), Postives = 20/34 (58.82%), Query Frame = 1
Query:  661 KHGRGGQSALRFARLRMEKRHNYVRKTAELAHSF 762
            KH  GGQS  R  R+  E  HN++++  E  +++
Sbjct:  172 KHMMGGQSQRRIDRIIDEMYHNFLKEVGEKVNAY 205          
BLAST of FC931729 vs. ExPASy Swiss-Prot
Match: RF1_PYRAE (Peptide chain release factor subunit 1 OS=Pyrobaculum aerophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.234e-13
Identity = 42/150 (28.00%), Postives = 71/150 (47.33%), Query Frame = 2
Query:  209 RGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLP 658
            +G  T++I+L +     +  V  +L  E+ TA+NIK +  R  V   +      LK   K P NG+ ++ G  + + G  + V     P +PIN   Y+CD  FHT+ L + L +   +G +V++    +   L G   EV+      +P
Sbjct:   30 KGYATTLITLYINAERPIPDVVNLLRSEWSTAANIKDKTTRTHVQDTLERIINNLKGEAKAPENGMAVFAGFHMINQGNYEWVYYVVIPPQPINTFKYICDTAFHTELLEDQLHAGVVYGIVVIERGEAVIALLKGGQWEVVKSVEFFVP 179          
The following BLAST results are available for this feature:
BLAST of FC931729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_AERPE1.028e-1533.56Peptide chain release factor subunit 1 OS=Aeropyru... [more]
RF1_SULSO1.338e-1431.29Peptide chain release factor subunit 1 OS=Sulfolob... [more]
RF1_PYRAE6.234e-1328.00Peptide chain release factor subunit 1 OS=Pyrobacu... [more]

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Properties
Property NameValue
Genbank descriptionC34108C12EF PostHarvP1 Citrus clementina cDNA clone C34108C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931729 ID=FC931729; Name=FC931729; organism=Citrus clementina; type=EST; length=771bp
GACTTTTATTCTTATTACATCCTCCCTTCTCCTACGAGTTAAGCAAATTC
CATCCTCTTGTTTGTTAGAAACCGATCTGCAATTCTCGGTGCTTTTATCA
CTGTTTTAGAGTTACTGTATCCACTTTACAATGGCAGATGGTCAGGAGAC
TGATAAAAATATTGAGATTTGGAAGATTAAGAAGTTGATCAAAGCACTTG
AAGCTGCTAGAGGAAATGGTACCAGCATGATATCTTTAATCATGCCTCCT
CGTGATCAGGTATCACGAGTCACAAAAATGCTGGGTGATGAGTTTGGAAC
TGCTTCAAACATCAAAAGCAGGGTCAATCGTCAATCTGTATTGGGTGCAA
TCACATCTGCTCAGCAAAGATTGAAGCTTTACAACAAGGTCCCTCCCAAT
GGGCTTGTGCTGTACACGGGAACAATTGTTACTGATGATGGGAAGGAAAA
GAAGGTTACAATTGACTTCGAGCCTTTCAGGCCTATTAATGCATCTCTTT
ACCTCTGTGACAATAAGTTTCACACTGACGCTCTGAATGAACTGTTGGAG
TCTGATGACAAGTTTGGTTTTATTGTCATGGATGGTAATGGAACCCTTTT
TGGGACTCTAAGTGGTAACACCCGTGAGGTGCTTCACAAGTTCAGTGTTG
ACCTTCCAAGAAACATGGAAGAGGTGGACAGTCAGCCCTTCGGTTTGCCC
GACTTCGAATGGAGAAGCGCCATAACTATGTGAGGAAAACAGCTGAACTT
GCACACAGTTTTATATCAATC
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