FC931733

Overview
NameFC931733
Unique NameFC931733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11279 contig Ccv1_Contig11279:876..1547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_LACCB (Chaperone protein dnaK OS=Lactobacillus casei (strain BL23) GN=dnaK PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.269e-81
Identity = 145/224 (64.73%), Postives = 188/224 (83.93%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFNDSQR ATKDAG+IAGL+V RIINEPTA++LAYG +K + +E ILV+DLGGGTFDVS+L++GDGVFEVLST+GDTHLGGDDFD +I+DWL + FK+D  IDL KDK A+QRL + AE+AK +LS +TQT ISLPFI+A  +GP H++ TLTR +F+E+ +DL+ + K PVE +L+DAKL+  D+D+VIL GGSTR PAVQE VK+ TG++ + ++NP
Sbjct:  115 ITVPAYFNDSQRQATKDAGKIAGLNVQRIINEPTASALAYGLDKGDKDEKILVYDLGGGTFDVSILQLGDGVFEVLSTNGDTHLGGDDFDNKIIDWLVAEFKKDNNIDLSKDKMAMQRLKDAAEKAKKDLSGVTQTQISLPFISAGPNGPLHLERTLTRAQFDEMTADLVAKTKIPVENALKDAKLTNADIDKVILNGGSTRTPAVQEAVKQWTGKDPDHSINP 338          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_LACC3 (Chaperone protein dnaK OS=Lactobacillus casei (strain ATCC 334) GN=dnaK PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.269e-81
Identity = 145/224 (64.73%), Postives = 188/224 (83.93%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFNDSQR ATKDAG+IAGL+V RIINEPTA++LAYG +K + +E ILV+DLGGGTFDVS+L++GDGVFEVLST+GDTHLGGDDFD +I+DWL + FK+D  IDL KDK A+QRL + AE+AK +LS +TQT ISLPFI+A  +GP H++ TLTR +F+E+ +DL+ + K PVE +L+DAKL+  D+D+VIL GGSTR PAVQE VK+ TG++ + ++NP
Sbjct:  115 ITVPAYFNDSQRQATKDAGKIAGLNVQRIINEPTASALAYGLDKGDKDEKILVYDLGGGTFDVSILQLGDGVFEVLSTNGDTHLGGDDFDNKIIDWLVAEFKKDNNIDLSKDKMAMQRLKDAAEKAKKDLSGVTQTQISLPFISAGPNGPLHLERTLTRAQFDEMTADLVAKTKIPVENALKDAKLTNADIDKVILNGGSTRTPAVQEAVKQWTGKDPDHSINP 338          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_BACSK (Chaperone protein dnaK OS=Bacillus clausii (strain KSM-K16) GN=dnaK PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.269e-81
Identity = 146/223 (65.47%), Postives = 185/223 (82.96%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFNDSQR ATKDAG+IAGL+V RI+NEPTAA+LAYG EK++++TILV+DLGGGTFDVS+LE+GDG FEV +TSGD  LGGDDFD+ I+D L + FK++ GIDL +DK A+QRL + AE+AK +LS +TQT ISLPFITA A GPKH++ TLTR KF+EL +DL++R   P   +L DA LS  D+D+V+LVGGSTRIPAVQE +KK+TG++ +  VNP
Sbjct:  114 ITVPAYFNDSQRQATKDAGKIAGLEVDRIVNEPTAAALAYGLEKEDDQTILVYDLGGGTFDVSILELGDGFFEVKATSGDNKLGGDDFDEVIMDHLVAEFKKENGIDLSQDKMAMQRLKDAAEKAKKDLSGVTQTQISLPFITADATGPKHLELTLTRAKFDELSADLVERTLGPTRRALSDAGLSASDIDKVVLVGGSTRIPAVQEAIKKLTGKDPHKGVNP 336          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_AZOC5 (Chaperone protein dnaK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.269e-81
Identity = 150/223 (67.26%), Postives = 180/223 (80.72%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFND+QR ATKDAGRIAGL+VLRIINEPTAA+LAYG +KKN+ TI V+DLGGGTFDVSVLE+GDGVFEV ST+GDT LGG+DFD R+V++LA  FK+++GIDL  DK ALQRL E AE+AK+ELSS TQT I+LPFITA A GPKH+   LTR KFE L  DL+ R   P   +L+DA LS   +DEV+LVGG TR+P VQE+VK+  G+E +  VNP
Sbjct:  140 ITVPAYFNDAQRQATKDAGRIAGLEVLRIINEPTAAALAYGLDKKNSGTIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQGIDLRNDKLALQRLKEAAEKAKIELSSATQTEINLPFITADASGPKHLTMKLTRAKFEALVEDLIQRTMEPCRLALKDAGLSAGQIDEVVLVGGMTRMPKVQEMVKQFFGKEPHKGVNP 362          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_LACS1 (Chaperone protein dnaK OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=dnaK PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.211e-80
Identity = 150/224 (66.96%), Postives = 179/224 (79.91%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFNDSQR ATKDAG+IAGL V RI+NEPTAA+LAYG +K + +E ILVFDLGGGTFDVS+LE+GDGVFEVLST+GDTHLGGDDFD +I+DWL  NFK D GIDL +DK A+QRL + AE+AK +LS  T+  ISLPFI A   GP H++T+L+R KF EL  DL++R K PV  +L DA L+  D+DEVILVGGSTRIPAV+E VK  TG   N +VNP
Sbjct:  115 ITVPAYFNDSQRQATKDAGKIAGLKVERIVNEPTAAALAYGLDKLDKDERILVFDLGGGTFDVSILELGDGVFEVLSTNGDTHLGGDDFDNKIIDWLVENFKADNGIDLSQDKMAMQRLKDAAEKAKKDLSGTTEAQISLPFIAAGEAGPLHLETSLSRAKFNELTEDLVERTKIPVRNALADAGLTNADIDEVILVGGSTRIPAVKEAVKAETGHTPNESVNP 338          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBL (Chaperone protein dnaK OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dnaK PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.581e-80
Identity = 148/224 (66.07%), Postives = 178/224 (79.46%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFND QR ATKDAGRIAGL+V RIINEPTAA+LAYGF+KKN N  I V+DLGGGTFD+S+LE+ DGVFEV ST+GDTHLGGDDFD  I++W+ S FK   GID+  DK  +QRL E AE+AK+ELS    T I+LPFITA A GPKH+D TL+R KF++L   L+DR + P E +LRDA L   D++EVILVGGS RIPAVQELVK++ G+E N +VNP
Sbjct:  140 ITVPAYFNDEQRQATKDAGRIAGLEVERIINEPTAAALAYGFDKKNVNSKIAVYDLGGGTFDISILELADGVFEVKSTNGDTHLGGDDFDMAIMEWMISEFKNQTGIDISADKNTVQRLKEAAEKAKIELSGTMSTQINLPFITADASGPKHLDMTLSRAKFDQLTKSLVDRTRIPCENALRDAGLKASDINEVILVGGSIRIPAVQELVKQIFGKEPNKSVNP 363          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBJ (Chaperone protein dnaK OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dnaK PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.581e-80
Identity = 148/224 (66.07%), Postives = 178/224 (79.46%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFND QR ATKDAGRIAGL+V RIINEPTAA+LAYGF+KKN N  I V+DLGGGTFD+S+LE+ DGVFEV ST+GDTHLGGDDFD  I++W+ S FK   GID+  DK  +QRL E AE+AK+ELS    T I+LPFITA A GPKH+D TL+R KF++L   L+DR + P E +LRDA L   D++EVILVGGS RIPAVQELVK++ G+E N +VNP
Sbjct:  140 ITVPAYFNDEQRQATKDAGRIAGLEVERIINEPTAAALAYGFDKKNVNSKIAVYDLGGGTFDISILELADGVFEVKSTNGDTHLGGDDFDMAIMEWMISEFKNQTGIDISADKNTVQRLKEAAEKAKIELSGTMSTQINLPFITADASGPKHLDMTLSRAKFDQLTKSLVDRTRIPCENALRDAGLKASDINEVILVGGSIRIPAVQELVKQIFGKEPNKSVNP 363          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_GEOKA (Chaperone protein dnaK OS=Geobacillus kaustophilus GN=dnaK PE=1 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.581e-80
Identity = 147/223 (65.92%), Postives = 185/223 (82.96%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFND+QR ATKDAGRIAGL+V RIINEPTAA+LAYG +K+ ++TILV+DLGGGTFDVS+LE+GDGVFEV +T+GD HLGGDDFD+ I+D+L + FK++ GIDL KDK ALQRL + AE+AK ELS +TQT ISLPFI+A  +GP H++ TLTR KFEEL + L++R   PV  +L+DA L+  D+D+VILVGGSTRIPAVQE +K+  G+E +  VNP
Sbjct:  114 ITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNP 336          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK3_SYNY3 (Chaperone protein dnaK3 OS=Synechocystis sp. (strain PCC 6803) GN=dnaK3 PE=2 SV=2)

HSP 1 Score: 298.901 bits (764), Expect = 1.581e-80
Identity = 149/223 (66.82%), Postives = 181/223 (81.17%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFNDSQR AT+DAG+IAGL+VLRIINEPTAASLAYG ++   + ILVFDLGGGTFDVSVLEVGDG+FEV +TSGDT LGG+DFD+RIVDWLA  F   E +DL +D+QALQRLTE AE+AK+ELS +  T I+LPFITAT DGPKH++T L+R +FE+LC DL+ RL+ PV+  L+DA LS   +DEV+LVGG TR+P V+ LV+    RE N  VNP
Sbjct:  140 ITVPAYFNDSQRQATRDAGKIAGLEVLRIINEPTAASLAYGLDQGRIQKILVFDLGGGTFDVSVLEVGDGIFEVKATSGDTQLGGNDFDRRIVDWLAEKFLEAEKVDLRQDRQALQRLTEAAEKAKIELSGVGTTEINLPFITATEDGPKHLETQLSRSEFEDLCGDLVTRLQRPVKRVLKDAGLSPVQIDEVVLVGGGTRMPMVKGLVRSFIDREPNENVNP 362          
BLAST of FC931733 vs. ExPASy Swiss-Prot
Match: DNAK_PROA2 (Chaperone protein dnaK OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=dnaK PE=2 SV=1)

HSP 1 Score: 298.516 bits (763), Expect = 2.065e-80
Identity = 148/224 (66.07%), Postives = 181/224 (80.80%), Query Frame = 2
Query:    2 VTVPAYFNDSQRTATKDAGRIAGLDVLRIINEPTAASLAYGFEKKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKRDEGIDLLKDKQALQRLTETAEEAKMELSSLTQTNISLPFITATADGPKHIDTTLTRVKFEELCSDLLDRLKTPVETSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKMTGRETNVTVNP 670
            +TVPAYFND+QR ATKDAG+IAGL+V RIINEPTAA+LAYG +KK  NE + VFDLGGGTFD+S+LE+GDGVFEV ST GDTHLGGDDFD+ I+D+LA  FK+ EGIDL  D  ALQRL E AE+AK+ELSS T T I+LPFITAT +GPKH+   LTR KFE L S L D +  P + ++++AK++  ++DEV+LVGGSTRIP VQELVK++  RE N +VNP
Sbjct:  137 ITVPAYFNDAQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDKKKENEKVAVFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQTIIDFLADEFKKQEGIDLRTDAIALQRLKEAAEKAKIELSSRTDTEINLPFITATQEGPKHLVVNLTRAKFEALASTLFDNIMAPCKRAIKNAKVNISEIDEVVLVGGSTRIPKVQELVKELFKREPNKSVNP 360          
The following BLAST results are available for this feature:
BLAST of FC931733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_LACCB9.269e-8164.73Chaperone protein dnaK OS=Lactobacillus casei (str... [more]
DNAK_LACC39.269e-8164.73Chaperone protein dnaK OS=Lactobacillus casei (str... [more]
DNAK_BACSK9.269e-8165.47Chaperone protein dnaK OS=Bacillus clausii (strain... [more]
DNAK_AZOC59.269e-8167.26Chaperone protein dnaK OS=Azorhizobium caulinodans... [more]
DNAK_LACS11.211e-8066.96Chaperone protein dnaK OS=Lactobacillus salivarius... [more]
DNAK_LEPBL1.581e-8066.07Chaperone protein dnaK OS=Leptospira borgpeterseni... [more]
DNAK_LEPBJ1.581e-8066.07Chaperone protein dnaK OS=Leptospira borgpeterseni... [more]
DNAK_GEOKA1.581e-8065.92Chaperone protein dnaK OS=Geobacillus kaustophilus... [more]
DNAK3_SYNY31.581e-8066.82Chaperone protein dnaK3 OS=Synechocystis sp. (stra... [more]
DNAK_PROA22.065e-8066.07Chaperone protein dnaK OS=Prosthecochloris aestuar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108D05EF PostHarvP1 Citrus clementina cDNA clone C34108D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931733 ID=FC931733; Name=FC931733; organism=Citrus clementina; type=EST; length=672bp
GGTCACAGTGCCTGCTTACTTCAATGATTCCCAGAGAACAGCAACAAAGG
ATGCTGGTCGAATTGCTGGCTTAGATGTTCTGCGTATAATTAATGAGCCT
ACTGCTGCTTCGTTGGCATATGGATTTGAAAAGAAAAACAACGAGACCAT
CCTAGTGTTTGACCTTGGTGGTGGTACTTTTGATGTTTCAGTCCTTGAGG
TCGGTGATGGAGTGTTTGAAGTGCTCTCCACCTCAGGCGATACGCATTTG
GGTGGTGATGATTTTGATAAGAGGATTGTTGATTGGCTTGCTTCAAACTT
CAAGAGAGATGAAGGCATAGATCTTTTGAAGGACAAACAAGCTCTTCAGC
GTCTAACTGAGACGGCTGAGGAGGCTAAGATGGAGCTGTCATCTTTGACT
CAAACAAACATCAGCTTGCCTTTCATTACTGCTACTGCAGATGGGCCGAA
GCATATTGACACCACCCTTACGAGGGTTAAGTTTGAGGAATTGTGTTCAG
ACCTACTGGACAGGCTCAAGACGCCTGTTGAAACTTCTTTGCGGGATGCA
AAACTTTCCTTCAAGGATCTTGATGAGGTTATTCTTGTTGGTGGATCAAC
ACGTATTCCAGCTGTTCAGGAGCTGGTGAAGAAGATGACTGGAAGGGAAA
CCAATGTTACAGTCAATCCTGA
back to top