FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPB_RAT (T-complex protein 1 subunit beta OS=Rattus norvegicus GN=Cct2 PE=1 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 4.165e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  275 NFFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +  VTND ATI+  + V +PAAK+LV   + Q +E+GDG       A E+L+ AE LI   +HP  II+G+ +A
Sbjct:   60 SLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREA 133

HSP 2 Score: 22.3274 bits (46), Expect = 4.165e-11
Identity = 6/20 (30.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  205 LSTITRTSLGPNGMNKMVIN 264
            +  + +++LGP GM+K++++
Sbjct:   35 IGDLVKSTLGPKGMDKILLS 54
[Close]
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 4.165e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  275 NFFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +  VTND ATI+  + V +PAAK+LV   + Q +E+GDG       A E+L+ AE LI   +HP  II+G+ +A
Sbjct:   60 SLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREA 133

HSP 2 Score: 22.3274 bits (46), Expect = 4.165e-11
Identity = 6/20 (30.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  205 LSTITRTSLGPNGMNKMVIN 264
            +  + +++LGP GM+K++++
Sbjct:   35 IGDLVKSTLGPKGMDKILLS 54
[Close]
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 65.855 bits (159), Expect = 4.165e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  275 NFFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +  VTND ATI+  + V +PAAK+LV   + Q +E+GDG       A E+L+ AE LI   +HP  II+G+ +A
Sbjct:   60 SLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREA 133

HSP 2 Score: 22.3274 bits (46), Expect = 4.165e-11
Identity = 6/20 (30.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  205 LSTITRTSLGPNGMNKMVIN 264
            +  + +++LGP GM+K++++
Sbjct:   35 IGDLVKSTLGPKGMDKILLS 54
[Close]
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 4.165e-11
Identity = 32/74 (43.24%), Postives = 46/74 (62.16%), Query Frame = 2 
Query:  275 NFFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +  VTND ATI+  + V +PAAK+LV   + Q +E+GDG       A E+L+ AE LI   +HP  II+G+ +A
Sbjct:   60 SLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGWREA 133

HSP 2 Score: 22.3274 bits (46), Expect = 4.165e-11
Identity = 6/20 (30.00%), Postives = 16/20 (80.00%), Query Frame = 1 
Query:  205 LSTITRTSLGPNGMNKMVIN 264
            +  + +++LGP GM+K++++
Sbjct:   35 IGDLVKSTLGPKGMDKILLS 54
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
TCPB_RAT4.165e-1143.24T-complex protein 1 subunit beta OS=Rattus norvegi... [more]
TCPB_MACFA4.165e-1143.24T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN4.165e-1143.24T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPB_BOVIN4.165e-1143.24T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
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