FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.296e-20
Identity = 49/134 (36.57%), Postives = 71/134 (52.99%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE---EILCPLIADACIQVCPK 676
            +TND ATIV  +EVQHP AKLL+   K    E+GDG    +  AG +L+ AE+L+   +HP+ II GY KA+N +           S   D +   +++Y     ++SK F  E   E +  L+ DA + V  K
Sbjct:   53 ITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALNSSLELLKNIADKISPE-DRKIVHDLVY---TTLSSKFFSTEHTLEKIINLVIDASLAVLDK 182          

HSP 2 Score: 37.3502 bits (85), Expect = 3.296e-20
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 273
            +L+EG +  +G +E +L NI   K L  + ++SLGP G++KM++   D
Sbjct:    4 LLREGTQRSTG-NEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQD 50          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS_PYRHO (Thermosome subunit OS=Pyrococcus horikoshii GN=ths PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 9.427e-20
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 505
            +TND ATI++E+++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS II GYT A  K
Sbjct:   61 ITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYTLASQK 134          

HSP 2 Score: 33.8834 bits (76), Expect = 9.427e-20
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D A   NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRD-AQRMNILAARIIAETVRTTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSA_THEK8 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-8) GN=thsA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.226e-19
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVR---NTEEVIYR--MKAAVASKQFGQEEILCPLIADACIQVCPK 676
            VTND ATI++++++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS II GY  A  K             E + ++   + EE + R  M +         +E+L  L  DA  QV  K
Sbjct:   61 VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEIL--------EEIAIKVNPDDEETLLRIAMTSITGKNAESHKELLAKLAVDAVKQVAEK 188          

HSP 2 Score: 33.8834 bits (76), Expect = 1.226e-19
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D   L NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSG_SULSH (Thermosome subunit gamma OS=Sulfolobus shibatae GN=thsC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.595e-19
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE---EILCPLIADACIQVCPKTPAT 688
            +TND ATIV  +EVQHP AKLL+   K    E+GDG    +  AG +L+ AE+L+   +HP+ II GY KA++ +           S   D +   +++Y     ++SK F  E   E +  L+ +A + V  K   T
Sbjct:   53 ITNDGATIVKNMEVQHPTAKLLIETAKTVDTEVGDGTTSVVVLAGLLLEKAEDLLNQKIHPTVIIEGYRKALSSSLELLKSIADKISPE-DRKIVHDLVY---TTLSSKFFSTEHTLEKIINLVIEASLAVLDKRDGT 186          

HSP 2 Score: 37.3502 bits (85), Expect = 1.595e-19
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 273
            +L+EG +  +G +E +L NI   K L  + ++SLGP G++KM++   D
Sbjct:    4 LLREGTQRSTG-NEVILNNIAVAKILLEMLKSSLGPKGLDKMLVEGQD 50          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSB_SULAC (Thermosome subunit beta OS=Sulfolobus acidocaldarius GN=thsB PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.696e-19
Identity = 48/129 (37.21%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQV 667
            +TND ATI++++++QHPAAKLLV   K Q EE  DG    + F+GE+++ AEEL+   +HP+ I+SGY KA               S  + V +TE +      +++SK   G  E L  ++  A  QV
Sbjct:   68 ITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVIFSGELVKKAEELLYKEIHPTIIVSGYKKAEEMAIKTIEEI----STKVSVNDTEILRKVALTSLSSKAVAGAREHLADIVVKAITQV 192          

HSP 2 Score: 34.6538 bits (78), Expect = 2.696e-19
Identity = 19/47 (40.43%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +LKEG     G  EA+  NI A K +    +T+ GP GM+KM+++ L
Sbjct:   18 ILKEGSSRTYG-KEALRINIAAVKAVEEALKTTYGPRGMDKMLVDSL 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSA_METTH (Thermosome subunit alpha OS=Methanobacterium thermoautotrophicum GN=thsA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 2.697e-19
Identity = 46/128 (35.94%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQV 667
            +TND  TI+ E+++ HPAAK+LV   K Q++E+GDG    +  AGE+L+ AE+LI MG+HP+ I  GY  A  K            S+   +          K +  +K     E L  L+ DA +QV
Sbjct:   60 ITNDGVTILREMDISHPAAKMLVEVAKTQEDEVGDGTTTAVIIAGELLKEAEKLIEMGVHPTIIALGYRNAALKAQEILEEISMEASDRDTLMKVAITAMTGKGSERAK-----EKLAELVVDAVMQV 182          

HSP 2 Score: 32.7278 bits (73), Expect = 2.697e-19
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            EA   NI A K L+   RT+LGP GM+KM+++ L
Sbjct:   22 EAQRINILAGKVLAETVRTTLGPKGMDKMLVDSL 55          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.507e-19
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEILCPLIADACIQVCPK 676
            +TND ATI++E+++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS II GY  A  K            S + DV   ++         A+++  + E L  +  +A  QV  K
Sbjct:   61 ITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIIIKGYALAAEKAQEILEGIAKEVSPD-DVETLKKAAVTSITGKAAEE--EREYLAEIAVEAVRQVAEK 188          

HSP 2 Score: 33.113 bits (74), Expect = 3.507e-19
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D   L NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRDAQRL-NILAARIVAETIRTTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS_PYRAB (Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.560e-19
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 505
            +TND ATI++E+++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS +I GY  A  K
Sbjct:   61 ITNDGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLKKAEELLDQNIHPSIVIKGYMLAAEK 134          

HSP 2 Score: 33.8834 bits (76), Expect = 4.560e-19
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D A   NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRD-AQRMNILAARIIAETVRTTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.560e-19
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQVCPK 676
            VTND ATI++++++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS II GY  A  K            +  +D  + E ++     ++  K     +E+L  L  +A  QV  K
Sbjct:   61 VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEI----AIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEK 188          

HSP 2 Score: 33.8834 bits (76), Expect = 4.560e-19
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D   L NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.560e-19
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQVCPK 676
            VTND ATI++++++QHPAAK++V   K Q +E GDG    +  AGE+L+ AEEL+   +HPS II GY  A  K            +  +D  + E ++     ++  K     +E+L  L  +A  QV  K
Sbjct:   61 VTNDGATILDKIDLQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSIIIKGYALAAEKAQEILDEI----AIRVDPDDEETLLKIAATSITGKNAESHKELLAKLAVEAVKQVAEK 188          

HSP 2 Score: 33.8834 bits (76), Expect = 4.560e-19
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L EG +   G D   L NI A + ++   RT+LGP GM+KM+++ L
Sbjct:   11 ILPEGTQRYVGRDAQRL-NILAARIIAETVRTTLGPKGMDKMLVDSL 56          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THSG_SULSO3.296e-2036.57Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
THS_PYRHO9.427e-2051.35Thermosome subunit OS=Pyrococcus horikoshii GN=ths... [more]
THSA_THEK81.226e-1936.76Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSG_SULSH1.595e-1934.78Thermosome subunit gamma OS=Sulfolobus shibatae GN... [more]
THSB_SULAC2.696e-1937.21Thermosome subunit beta OS=Sulfolobus acidocaldari... [more]
THSA_METTH2.697e-1935.94Thermosome subunit alpha OS=Methanobacterium therm... [more]
THS_DESSY3.507e-1935.88Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
THS_PYRAB4.560e-1948.65Thermosome subunit OS=Pyrococcus abyssi GN=ths PE=... [more]
THSA_THEK14.560e-1935.61Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO4.560e-1935.61Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
back to top