FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_ARATH (T-complex protein 1 subunit alpha OS=Arabidopsis thaliana GN=CCT1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 8.192e-18
Identity = 44/129 (34.11%), Postives = 69/129 (53.49%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQF-GQEEILCPLIADACIQV 667
            +TND ATI+  LEV+HPAAK+LV   + Q  E+GDG    +  A E+L+ A +L+R  +HP+ IISGY  A+ ++            E +       +I   K +++SK   G  +    L+ +A + V
Sbjct:   57 ITNDGATILRMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMRESCKYIEEKLVTKVEKL---GKVPLINCAKTSMSSKLISGDSDFFANLVVEAVLSV 182          

HSP 2 Score: 35.039 bits (79), Expect = 8.192e-18
Identity = 13/30 (43.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  181 KNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +N+ AC+ +S I +TSLGP G++KM+++ +
Sbjct:   23 QNVMACQAVSNIVKTSLGPVGLDKMLVDDI 52          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.194e-18
Identity = 32/73 (43.84%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAIN 502
            +TND AT++N L + HPAA +LV   K+Q +E+GDG    +  AGE+L  A+ L+  G+ P+ II G+  A N
Sbjct:   60 ITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACN 132          

HSP 2 Score: 40.0466 bits (92), Expect = 8.194e-18
Identity = 18/48 (37.50%), Postives = 31/48 (64.58%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLD 273
            +LKEG     G  + +++NI+AC+ +  I +T+LGP GM+K++    D
Sbjct:   11 LLKEGTDTAQGRSQ-IIRNINACQIIVDIVKTTLGPRGMDKLIYTERD 57          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSB_ARCFU (Thermosome subunit beta OS=Archaeoglobus fulgidus GN=thsB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.065e-17
Identity = 33/74 (44.59%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 505
            +TND  TI+ E++V+HPAAK+++   K Q  E+GDG    +  AGE+L+ AEEL+   +HP+ I +GY  A  K
Sbjct:   61 ITNDGVTILKEIDVEHPAAKMIIEVAKTQDNEVGDGTTTAVVLAGELLKRAEELLDQEIHPAIIANGYRYAAEK 134          

HSP 2 Score: 34.2686 bits (77), Expect = 1.065e-17
Identity = 18/47 (38.30%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +L+EG +   G D A   NI A + ++   R++LGP GM+KM+++ L
Sbjct:   11 ILREGTQRTVGRD-AQRMNIMAARVIAEAVRSTLGPKGMDKMLVDSL 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.065e-17
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASK 610
            +TND ATI+ +++VQH  AKL+V   K+Q  EIGDG    +  AG +L+ AE+LI  G+HP +I  G+  A  K            S+   V N E ++   + ++ SK
Sbjct:   71 ITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETLDSI----SDKFPVENRERLVETAQTSLGSK 175          

HSP 2 Score: 35.8094 bits (81), Expect = 1.065e-17
Identity = 21/54 (38.89%), Postives = 35/54 (64.81%), Query Frame = 1
Query:  103 SMQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            S QP+ I    +E  K ++G+ EAV  +I A + ++   RTSLGP G++KM+++
Sbjct:   13 SGQPF-IVMREQENQKRITGV-EAVKSHILAARAVANTLRTSLGPRGLDKMLVS 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.385e-17
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASK 610
            VTND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A               S  +D+++TE +I   K  + SK
Sbjct:   70 VTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR--VAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSK 176          

HSP 2 Score: 35.039 bits (79), Expect = 1.385e-17
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA+  +I A K ++   RTSLGPNG++KM+++
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVD 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.385e-17
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASK 610
            VTND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A               S  +D+++TE +I   K  + SK
Sbjct:   70 VTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR--VAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSK 176          

HSP 2 Score: 35.039 bits (79), Expect = 1.385e-17
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA+  +I A K ++   RTSLGPNG++KM+++
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVD 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.385e-17
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASK 610
            VTND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A               S  +D+++TE +I   K  + SK
Sbjct:   70 VTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR--VAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSK 176          

HSP 2 Score: 35.039 bits (79), Expect = 1.385e-17
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA+  +I A K ++   RTSLGPNG++KM+++
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVD 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.043e-17
Identity = 43/136 (31.62%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HP+AK+LV   KAQ  E GDG    +  AG +L     L++ G+HP+ I   + KA++K            S+ + + + E ++     ++ SK   Q   +L P+  DA ++V     AT
Sbjct:   67 ITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVEVLTAM----SQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRVIDPATAT 198          

HSP 2 Score: 33.113 bits (74), Expect = 3.043e-17
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   34 NISAAKAVADAVRTSLGPKGMDKMI 58          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.955e-17
Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSEN--MDVRNTEEVIYRMKAAVASK 610
            VTND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A               S+N  +D+ N E +I   K  + SK
Sbjct:   70 VTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKI----SDNVLVDINNPEPLIQTAKTTLGSK 176          

HSP 2 Score: 35.039 bits (79), Expect = 3.955e-17
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA+  +I A K ++   RTSLGPNG++KM+++
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVD 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_YARLI (T-complex protein 1 subunit delta OS=Yarrowia lipolytica GN=CCT4 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.958e-17
Identity = 43/134 (32.09%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTP 682
            ++ND  TI+  + V HPAAK+LV    +Q    GDG    +  AG +L  A++L++ G+HPS I   + KA  +            S+ +D+ + E +I     ++ SK   Q    L P++ DA +Q   KTP
Sbjct:   57 ISNDGNTILQHMAVMHPAAKMLVDLSASQDSVAGDGTTSVVILAGSLLGAADKLLKKGIHPSIIAENFQKAAQRAAEVVMDM----SKPIDLSDRETLIRAASTSLNSKIVSQFSSTLAPMLVDAALQAAKKTP 186          

HSP 2 Score: 32.3426 bits (72), Expect = 3.958e-17
Identity = 17/41 (41.46%), Postives = 23/41 (56.10%), Query Frame = 1
Query:  136 KEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMV 258
            K G K+     E    NI A + ++   RTSLGP GM+KM+
Sbjct:    8 KSGFKNKEKPLEVRKSNILAARAVADAIRTSLGPKGMDKMI 48          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
TCPA_ARATH8.192e-1834.11T-complex protein 1 subunit alpha OS=Arabidopsis t... [more]
TCPH_PLAF78.194e-1843.84T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
THSB_ARCFU1.065e-1744.59Thermosome subunit beta OS=Archaeoglobus fulgidus ... [more]
TCPE_CAEEL1.065e-1736.70T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPE_PONAB1.385e-1737.61T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA1.385e-1737.61T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.385e-1737.61T-complex protein 1 subunit epsilon OS=Homo sapien... [more]
TCPD_TAKRU3.043e-1731.62T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPE_RAT3.955e-1737.84T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPD_YARLI3.958e-1732.09T-complex protein 1 subunit delta OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
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