FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSB_SULSO (Thermosome subunit beta OS=Sulfolobus solfataricus GN=thsB PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.139e-17
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +TND ATI++++++QHP  KLLV   K Q EE  DG    +  AGE+ + AE+L+   +HP+ I+SGY KA
Sbjct:   67 ITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKA 137          

HSP 2 Score: 34.2686 bits (77), Expect = 5.139e-17
Identity = 18/47 (38.30%), Postives = 28/47 (59.57%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +LKEG     G  EA+  NI A K +    +++ GP GM+KM+++ L
Sbjct:   17 ILKEGSSRTYG-KEALRANIAAVKAIEEALKSTYGPRGMDKMLVDSL 62          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_TETPY (T-complex protein 1 subunit alpha OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.140e-17
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADA 655
            +TND ATI+ +LEVQHPAAK++V   + Q +E+GDG    +  A E+L+ A ELI+  +HP+ II+G+  A  +             E +     E +I   K +++SK  G E  +   ++ DA
Sbjct:   54 ITNDGATILRQLEVQHPAAKVIVELSQLQDKEVGDGTTSVVILAAELLKRANELIKNKVHPTSIITGFKIAAKEACTYIKEHLAISVEEL---GREALINAAKTSMSSKLIGPESNLFSQIVVDA 175          

HSP 2 Score: 29.261 bits (64), Expect = 5.140e-17
Identity = 10/27 (37.04%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMVIN 264
            N+ A   ++ I ++SLGP G++KM+++
Sbjct:   21 NVTAVMAIANIVKSSLGPQGLDKMLVD 47          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSB_SULSH (Thermosome subunit beta OS=Sulfolobus shibatae GN=thsB PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.685e-17
Identity = 33/71 (46.48%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +TND ATI++++++QHP  KLLV   K Q EE  DG    +  AGE+ + AE+L+   +HP+ I+SGY KA
Sbjct:   67 ITNDGATILDKMDLQHPTGKLLVQIAKGQDEETADGTKTAVILAGELAKKAEDLLYKEIHPTIIVSGYKKA 137          

HSP 2 Score: 33.4982 bits (75), Expect = 8.685e-17
Identity = 18/47 (38.30%), Postives = 27/47 (57.45%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHL 270
            +LKEG     G  EA+  NI A K +    +++ GP GM+KM ++ L
Sbjct:   17 ILKEGSSRTYG-KEALRANIAAVKAIEEALKSTYGPRGMDKMFVDSL 62          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_AEDTR (T-complex protein 1 subunit delta OS=Aedes triseriatus PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.691e-17
Identity = 41/129 (31.78%), Postives = 68/129 (52.71%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEI-LCPLIADACIQV 667
            +TND ATI+ ++ V HPAAK+LV   +AQ  E GDG    +  AG +L+  E+L++MG+HP+ I   + K   K            S  +++ + E ++     ++ SK   Q    L P+  +A ++V
Sbjct:   63 ITNDGATILKQMNVIHPAAKMLVELSRAQDVEAGDGTTSVVVVAGALLKAVEKLLQMGIHPTAISDAFQKCSAKAVDILTEM----STPIELTDRESLVKSASTSLNSKVVSQHSSQLAPIAVEAVLKV 187          

HSP 2 Score: 34.6538 bits (78), Expect = 8.691e-17
Identity = 20/51 (39.22%), Postives = 28/51 (54.90%), Query Frame = 1
Query:  106 MQPYGIQSMLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMV 258
            M+P G      + +K  S   +    NI+A K +S   RTSLGP GM+KM+
Sbjct:   10 MKPQG------QAYKDKSKPADIRQSNINAAKAVSDAIRTSLGPRGMDKMI 54          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.129e-16
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASK 610
            +TND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A                  +D+ N E +I   K  + SK
Sbjct:   70 ITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAAR--IAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSK 176          

HSP 2 Score: 35.039 bits (79), Expect = 1.129e-16
Identity = 15/32 (46.88%), Postives = 24/32 (75.00%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA+  +I A K ++   RTSLGPNG++KM+++
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVD 63          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.908e-16
Identity = 43/136 (31.62%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K            S   ++ + E ++     ++ SK   Q   +L P+  DA ++V     AT
Sbjct:   73 ITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM----SRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKVIDPATAT 204          

HSP 2 Score: 32.7278 bits (73), Expect = 1.908e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   40 NISAAKAVADAIRTSLGPKGMDKMI 64          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.909e-16
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +TND ATI+ +++++HPAA++LV   + Q+EE+GDG        GE+L  AE+L+   LHP+ I+ GYT+A
Sbjct:   61 ITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEA 131          

HSP 2 Score: 31.187 bits (69), Expect = 1.909e-16
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +L EG     G   A   NI A K ++   RT+LGP GM+KM+++
Sbjct:   11 ILAEGTNRTHGRS-AQDSNIRAGKAVAEAVRTTLGPRGMDKMLVD 54          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 3.224e-16
Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K            S  +++ + E ++     ++ SK   Q   +L P+  +A ++V     AT
Sbjct:   70 ITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM----SRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATAT 201          

HSP 2 Score: 32.7278 bits (73), Expect = 3.224e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMI 61          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.187e-16
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE---EILCPLIADACIQVCPKT 679
            VTND  TI+ E+++ +P A+++V   + Q++E GDG    ++ AGE+L+ AE+L+   +HP+ II GY  A  +            +  +DV   ++ + R  A  +    G E   E+L  +I DA  QV  +T
Sbjct:   64 VTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQA------REEVDNVAVDVDPDDKDLIRSVAETSMTGKGAELDKELLSSIIYDAVNQVAVET 192          

HSP 2 Score: 30.4166 bits (67), Expect = 4.187e-16
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMVINHL 270
            NI A + ++   R++LGP GM+KM+++ +
Sbjct:   31 NISAARAVADAVRSTLGPKGMDKMLVSSM 59          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 4.190e-16
Identity = 42/136 (30.88%), Postives = 71/136 (52.21%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K            S  +++ + E ++     ++ SK   Q   +L P+  +A ++V     AT
Sbjct:   70 ITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTDM----SRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKVIDPATAT 201          

HSP 2 Score: 32.7278 bits (73), Expect = 4.190e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMI 61          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THSB_SULSO5.139e-1746.48Thermosome subunit beta OS=Sulfolobus solfataricus... [more]
TCPA_TETPY5.140e-1735.20T-complex protein 1 subunit alpha OS=Tetrahymena p... [more]
THSB_SULSH8.685e-1746.48Thermosome subunit beta OS=Sulfolobus shibatae GN=... [more]
TCPD_AEDTR8.691e-1731.78T-complex protein 1 subunit delta OS=Aedes triseri... [more]
TCPE_MOUSE1.129e-1635.78T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPD_BOVIN1.908e-1631.62T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
THS3_HALVO1.909e-1645.07Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPD_HUMAN3.224e-1630.88T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
THSB_HALSA4.187e-1631.85Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPD_PONAB4.190e-1630.88T-complex protein 1 subunit delta OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
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