FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.441e-16
Identity = 45/131 (34.35%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE---EILCPLIADACIQV 667
            VTND  TI+ E+++ HPAA ++V   + Q++E+GDG    +  AGE+L  AE+L+   +H + I  GY +A  K            +E  D R T   I    AA A    G E   ++L  L+ DA + V
Sbjct:   63 VTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEKAKEVLEDNAIEVTE--DDRETLTKI----AATAMTGKGAESAKDLLSELVVDAVLAV 187          

HSP 2 Score: 33.8834 bits (76), Expect = 5.441e-16
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +L E  +  SG D A   NI A K ++   RT+LGP GM+KM+++
Sbjct:   13 ILGEDSQRTSGQD-AQSMNITAGKAVAEAVRTTLGPKGMDKMLVD 56          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.445e-16
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K            S  + + + E ++     ++ SK   Q   +L P+  +A ++V     AT
Sbjct:   70 ITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDM----SRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATAT 201          

HSP 2 Score: 32.7278 bits (73), Expect = 5.445e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMI 61          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 5.445e-16
Identity = 42/136 (30.88%), Postives = 70/136 (51.47%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K            S  + + + E ++     ++ SK   Q   +L P+  +A ++V     AT
Sbjct:   70 ITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTDM----SRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKVIDPATAT 201          

HSP 2 Score: 32.7278 bits (73), Expect = 5.445e-16
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMI 61          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.072e-16
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 499
            ++ND ATI+N L++ HPAAK LV   KAQ +E+GDG       AGE+L+ ++  I  G+HP  +  GY +A+
Sbjct:   57 ISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEAL 128          

HSP 2 Score: 33.4982 bits (75), Expect = 7.072e-16
Identity = 15/43 (34.88%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMV 258
            +LK+G     G  + ++ NI+A + +  I +T+LGP GM+K++
Sbjct:    8 LLKDGTDTSQGKAQ-IISNINAVQSIVEIVKTTLGPRGMDKLI 49          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 9.202e-16
Identity = 44/136 (32.35%), Postives = 69/136 (50.74%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQ-EEILCPLIADACIQVCPKTPAT 688
            +TND ATI+  L V HPAAK+LV    AQ  E GDG    +  AG +L  AE+L++ G+HP+ I   + +A   T           +  +++ + E ++     ++ SK   Q   +L P+  DA ++V     AT
Sbjct:   57 LTNDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGFT----VDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDPRVAT 188          

HSP 2 Score: 33.113 bits (74), Expect = 9.202e-16
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMV 258
            E  L NI A + ++   RTSLGP GM+KM+
Sbjct:   19 EVRLSNIMAARSVADAIRTSLGPKGMDKMI 48          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THSA_HALSA (Thermosome subunit alpha OS=Halobacterium salinarium GN=thsA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.017e-15
Identity = 28/74 (37.84%), Postives = 47/74 (63.51%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 505
            VTND  TI+ E++++HPAA ++V   + Q+ E+GDG   ++  +GE+L  AE L+   +H + +  GY +A  K
Sbjct:   62 VTNDGVTILKEMDIEHPAANMIVEVAETQETEVGDGTTTSVVVSGELLSEAETLLEQDIHATTLAQGYRQAAEK 135          

HSP 2 Score: 34.2686 bits (77), Expect = 2.017e-15
Identity = 18/45 (40.00%), Postives = 29/45 (64.44%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +L E  +  SG ++A   NI A K ++   RT+LGP GM+KM+++
Sbjct:   12 VLSEDSQRTSG-EDAQSMNITAGKAVAESVRTTLGPKGMDKMLVD 55          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.623e-15
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            VTND ATI+  ++V +  AKL+V   K+Q +EIGDG    +  AG +L+ AE+LI  G+HP  I  GY  A
Sbjct:   66 VTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETA 136          

HSP 2 Score: 32.7278 bits (73), Expect = 2.623e-15
Identity = 15/32 (46.88%), Postives = 23/32 (71.88%), Query Frame = 1
Query:  169 EAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            EA   +I A K +S I ++SLGP GM+KM+++
Sbjct:   28 EAHRSHILAAKTISNIMKSSLGPKGMDKMMVS 59          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.558e-15
Identity = 47/129 (36.43%), Postives = 71/129 (55.04%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADACIQV 667
            VTND ATI+  LEV+HPAAK+LV   + Q EE+GDG    +  A E+L+ A+EL++  +HP+ IISGY  A  +            +  +D    + +I   K +++SK  G + E    ++ DA   V
Sbjct:   57 VTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHL---TAPVDELGRDSLINIAKTSMSSKIIGADAEFFSAMVVDAAQSV 182          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 5.752e-15
Identity = 28/71 (39.44%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            ++ND AT++  L++ HPAA+ LV   K+Q  E+GDG    +  AGE L+ A+  +  G+HP  II  +  A
Sbjct:   61 ISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSA 131          

HSP 2 Score: 37.7354 bits (86), Expect = 5.752e-15
Identity = 18/43 (41.86%), Postives = 28/43 (65.12%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMV 258
            +LKEG     GL + ++ NI+AC  +    RT+LGP GM+K++
Sbjct:   11 LLKEGTDTSQGLPQ-LISNINACCAIVDTVRTTLGPRGMDKLI 52          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.480e-15
Identity = 46/137 (33.58%), Postives = 67/137 (48.91%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEV--IYRMKAAVASKQFGQEEILCPLIADACIQVCPKTPAT 688
            ++ND ATI+  LE++HPAAK+L    KAQ  E GDG       AG +L    +L+  G+HPS I   +  A+NK+           S ++ V  T+ V  +     ++ SK   Q   L  +  DA + V    PAT
Sbjct:   64 ISNDGATILQNLELRHPAAKMLAELAKAQDIEAGDGTTSVCVIAGSLLGAVSQLMAKGIHPSIISEAFNLALNKSLEVLV------SMSVPVSLTDRVSLVKSATTSLNSKVVSQYTNLASIAVDAVLSVI--NPAT 192          

HSP 2 Score: 32.3426 bits (72), Expect = 7.480e-15
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMVIN 264
            NI A + ++   RTSLGP GM+KM+I+
Sbjct:   31 NIVAARAVADAIRTSLGPKGMDKMIIS 57          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
THS1_HALVO5.441e-1634.35Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPD_RAT5.445e-1630.88T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE5.445e-1630.88T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPH_TETPY7.072e-1644.44T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPD_SCHPO9.202e-1632.35T-complex protein 1 subunit delta OS=Schizosacchar... [more]
THSA_HALSA2.017e-1537.84Thermosome subunit alpha OS=Halobacterium salinari... [more]
TCPE_DICDI2.623e-1546.48T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
TCPA_DROME5.558e-1536.43T-complex protein 1 subunit alpha OS=Drosophila me... [more]
TCPH_DICDI5.752e-1539.44T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPD_DICDI7.480e-1533.58T-complex protein 1 subunit delta OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
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