FC931735

Overview
NameFC931735
Unique NameFC931735
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length696
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_YEAST (T-complex protein 1 subunit alpha OS=Saccharomyces cerevisiae GN=TCP1 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.481e-15
Identity = 46/132 (34.85%), Postives = 74/132 (56.06%), Query Frame = 2
Query:  275 NFFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADACIQV 667
            +F VTND ATI++ L+VQHPA K+LV   + Q  EIGDG    +  A E+L+ A EL++  +HP+ II+G+  A+ +            S ++D    E +I   K +++SK  G + +    ++ DA + V
Sbjct:   59 DFTVTNDGATILSLLDVQHPAGKILVELAQQQDREIGDGTTSVVIIASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVL---STSVDTLGKETLINIAKTSMSSKIIGADSDFFSNMVVDALLAV 187          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_CHICK (T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 9.710e-15
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            ++ND ATI+  L+V HPAAK LV   K+Q  E+GDG       A E L+  +  +  GLHP  II  +  A
Sbjct:   58 ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 128          

HSP 2 Score: 41.2022 bits (95), Expect = 9.710e-15
Identity = 19/49 (38.78%), Postives = 32/49 (65.31%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDK 276
            +LKEG     G+ + V  NI+AC+ ++   RT+LGP GM+K++++   K
Sbjct:    8 LLKEGTDTSQGIPQLV-SNINACQVIAEAVRTTLGPRGMDKLIVDDRGK 55          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_MOUSE (T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 9.714e-15
Identity = 37/129 (28.68%), Postives = 59/129 (45.74%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQEEI-LCPLIADACIQV 667
            ++ND ATI+  L+V HPAAK LV   K+Q  E+GDG       A E L+  +  +  GLHP  II  +  A                +   V   + +      A++SK   Q+++    ++ DA + +
Sbjct:   58 ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMVVDAVMML 186          

HSP 2 Score: 40.817 bits (94), Expect = 9.714e-15
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +LKEG     G+ + V  NI AC+ ++   RT+LGP GM+K++++
Sbjct:    8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVD 51          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_CAEEL (T-complex protein 1 subunit alpha OS=Caenorhabditis elegans GN=cct-1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.238e-14
Identity = 44/125 (35.20%), Postives = 71/125 (56.80%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEEVIYRMKAAVASKQFGQE-EILCPLIADA 655
            VTND ATI+ +LEV+HPA K+LV   + Q EE+GDG    +  A E+L+ A+EL++  +HP+ II+GY  A  +            S+++     + V+   K +++SK  G + +    L+ DA
Sbjct:   58 VTNDGATILKQLEVEHPAGKVLVELAQLQDEEVGDGTTSVVIVAAELLKRADELVKQKVHPTTIINGYRLACKEAVKYISENISFTSDSI---GRQSVVNAAKTSMSSKIIGPDADFFGELVVDA 179          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: THS2_HALVO (Thermosome subunit 2 OS=Halobacterium volcanii GN=cct2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-14
Identity = 28/74 (37.84%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 505
            +TND  TI+ E+++ +P A+++V   + Q++E GDG    ++ AGE+L+ AE+L+   +HP+ II G+  A  K
Sbjct:   63 ITNDGVTILKEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLEQDIHPTAIIRGFNLASEK 136          

HSP 2 Score: 29.6462 bits (65), Expect = 1.261e-14
Identity = 11/29 (37.93%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMVINHL 270
            NI A + ++   R++LGP GM+KM+++ +
Sbjct:   30 NIRAARAVAEAVRSTLGPKGMDKMLVDSM 58          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_PONAB (T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.262e-14
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            ++ND ATI+  L+V HPAAK LV   K+Q  E+GDG       A E L+  +  +  GLHP  II  +  A
Sbjct:   58 ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 128          

HSP 2 Score: 40.817 bits (94), Expect = 1.262e-14
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +LKEG     G+ + V  NI AC+ ++   RT+LGP GM+K++++
Sbjct:    8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVD 51          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_HUMAN (T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2)

HSP 1 Score: 59.3066 bits (142), Expect = 1.262e-14
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            ++ND ATI+  L+V HPAAK LV   K+Q  E+GDG       A E L+  +  +  GLHP  II  +  A
Sbjct:   58 ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 128          

HSP 2 Score: 40.817 bits (94), Expect = 1.262e-14
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +LKEG     G+ + V  NI AC+ ++   RT+LGP GM+K++++
Sbjct:    8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVD 51          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.262e-14
Identity = 30/71 (42.25%), Postives = 40/71 (56.34%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            ++ND ATI+  L+V HPAAK LV   K+Q  E+GDG       A E L+  +  +  GLHP  II  +  A
Sbjct:   58 ISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTA 128          

HSP 2 Score: 40.817 bits (94), Expect = 1.262e-14
Identity = 18/45 (40.00%), Postives = 30/45 (66.67%), Query Frame = 1
Query:  130 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVIN 264
            +LKEG     G+ + V  NI AC+ ++   RT+LGP GM+K++++
Sbjct:    8 LLKEGTDSSQGIPQLV-SNISACQVIAEAVRTTLGPRGMDKLIVD 51          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPD_CAEEL (T-complex protein 1 subunit delta OS=Caenorhabditis elegans GN=cct-4 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.640e-14
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 496
            +TND ATI+N++ V HP AK+LV   KAQ  E GDG    +  AG +L  A+ L+  G+HP+ I   +  A
Sbjct:   69 ITNDGATILNQMSVIHPTAKMLVELSKAQDIEAGDGTTTVVVMAGALLDAAQNLLSKGIHPTTISESFQSA 139          

HSP 2 Score: 31.9574 bits (71), Expect = 1.640e-14
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  184 NIDACKQLSTITRTSLGPNGMNKMV 258
            NI A K ++   RTSLGP GM+KM+
Sbjct:   36 NIVAAKAVADAVRTSLGPRGMDKMI 60          
BLAST of FC931735 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.758e-14
Identity = 47/134 (35.07%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  284 VTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINKTXXXXXXXXXXGSENMDVRNTEE-----VIYRMKAAVASKQFG-QEEILCPLIADACIQV 667
            +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A  +            SEN+ + NT+E     +I   K +++SK  G   +    L+ DA + +
Sbjct:   54 ITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYI-------SENL-IINTDELGRDCLINAAKTSMSSKVIGINGDFFANLVVDAVLAI 179          
The following BLAST results are available for this feature:
BLAST of FC931735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
TCPA_YEAST9.481e-1534.85T-complex protein 1 subunit alpha OS=Saccharomyces... [more]
TCPH_CHICK9.710e-1542.25T-complex protein 1 subunit eta OS=Gallus gallus G... [more]
TCPH_MOUSE9.714e-1528.68T-complex protein 1 subunit eta OS=Mus musculus GN... [more]
TCPA_CAEEL1.238e-1435.20T-complex protein 1 subunit alpha OS=Caenorhabditi... [more]
THS2_HALVO1.261e-1437.84Thermosome subunit 2 OS=Halobacterium volcanii GN=... [more]
TCPH_PONAB1.262e-1442.25T-complex protein 1 subunit eta OS=Pongo abelii GN... [more]
TCPH_HUMAN1.262e-1442.25T-complex protein 1 subunit eta OS=Homo sapiens GN... [more]
TCPH_BOVIN1.262e-1442.25T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPD_CAEEL1.640e-1443.66T-complex protein 1 subunit delta OS=Caenorhabditi... [more]
TCPA_BOVIN2.758e-1435.07T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34108D07EF PostHarvP1 Citrus clementina cDNA clone C34108D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931735 ID=FC931735; Name=FC931735; organism=Citrus clementina; type=EST; length=696bp
AGGGATTTCGGGTTTATTTCTCCTCTCTCTGAATCACAACCTTGTAAAAG
AGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAAAAAAAAATGGGAT
TTTCAATGCAACCGTATGGGATACAGTCAATGCTCAAAGAAGGGCACAAG
CACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAACATCGATGCTTGCAA
ACAGCTTTCTACTATCACTCGCACTTCTCTTGGACCCAATGGTATGAATA
AGATGGTTATCAATCATTTAGACAAACTTTTTTGTCACAAATGATGCTGC
GACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCTGCCAAGCTTTTGG
TCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGATGGGGCCAATTTG
ACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAGAGGAGCTTATAAG
GATGGGCCTACACCCTAGTGAGATCATCAGTGGATACACTAAGGCGATCA
ATAAGACCATTGAAATCTTAGAAGAACTGGTGGAGGAAGGTTCTGAAAAT
ATGGATGTTAGAAATACGGAGGAAGTTATTTATCGAATGAAGGCTGCTGT
TGCTAGCAAGCAATTTGGCCAAGAGGAGATTTTGTGTCCGCTTATTGCTG
ATGCATGCATCCAAGTTTGCCCCAAGACCCCAGCCACTTTAACGTT
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