FC931753

Overview
NameFC931753
Unique NameFC931753
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length625
Libraries
Library NameType
PostHarvP1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:5..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_XANC5 (Chaperone protein dnaK OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DAKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_RICRS (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Sheila Smith) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_RICRO (Chaperone protein dnaK OS=Rickettsia rickettsii (strain Iowa) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_RICCN (Chaperone protein dnaK OS=Rickettsia conorii GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_RICAE (Chaperone protein dnaK OS=Rickettsia africae (strain ESF-5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 78/167 (46.71%), Postives = 107/167 (64.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV V +    ++I N +G RTTPS + F + E+L+G +AK Q   NP NT++  KRLIGR F D  V+ D  + P+ ++        +    + +  +++  +IS+ +L KM+E AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    2 GKVIGIDLGTTNSCVAVMEGKEPKVIENAEGERTTPSIIAFANGEKLVGQSAKRQAVTNPRNTIYAVKRLIGRNFIDPMVRKDQGIVPYNIVKADNGDAWV----EADNNKYSPSQISAFILQKMKETAENYLGDKVTQAVITVPAYFNDAQRQATKDAGKIAGLEV 164          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU2 (Chaperone protein dnaK OS=Pseudomonas syringae pv. syringae (strain B728a) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++  KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIENAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRKFEEDVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_PSESM (Chaperone protein dnaK OS=Pseudomonas syringae pv. tomato GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 82/168 (48.81%), Postives = 113/168 (67.26%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV + ++  V++I N +G RTTPS + +  D E L+G +AK Q   NP NT++  KRLIGR+F +  VQ D+++ P+K++        + VN     ++ A  +IS+ +L KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GRIIGIDLGTTNSCVSILENGNVKVIDNAEGTRTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLYAVKRLIGRKFDEQVVQKDIQMVPYKIVKADNGDAWVEVN----GQKMAPPQISAEILKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 165          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_BURM1 (Chaperone protein dnaK OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.416e-38
Identity = 88/168 (52.38%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV V + ++V++I N +G RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF +  VQ D+ L P+ +I   AD     V   G++   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V
Sbjct:    2 GKIIGIDLGTTNSCVAVMEGNQVKVIENSEGARTTPSIIAYMDDNEVLVGAPAKRQSVTNPKNTLFAVKRLIGRRFEEKEVQKDIGLMPYSIIK--ADNGDAWVEAHGQK--LAPPQVSAEVLRKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEV 165          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_XANP2 (Chaperone protein dnaK OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.099e-37
Identity = 87/165 (52.73%), Postives = 110/165 (66.67%), Query Frame = 3
Query:  132 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            IGIDLGTT SCV V +    ++I N +G RTTPS V FT D ERL+G  AK Q   NP  T F  KRLIGRR+ D +V+ D  L P+ ++   AD     V   G  K+++  +IS+ VL KM+E AE++LG  ++ AV+TVPAYFND+QRQATKDAG IAGL V
Sbjct:    5 IGIDLGTTNSCVAVMEGSTPKVIENAEGARTTPSIVAFTEDGERLVGQPAKRQSVTNPERTFFAVKRLIGRRYDDPTVEKDKHLVPYSIVR--ADNGDAWVEADG--KKYSPSQISAFVLQKMKETAESFLGEKVEKAVITVPAYFNDAQRQATKDAGRIAGLEV 165          
BLAST of FC931753 vs. ExPASy Swiss-Prot
Match: DNAK_XANAC (Chaperone protein dnaK OS=Xanthomonas axonopodis pv. citri GN=dnaK PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.099e-37
Identity = 84/168 (50.00%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  123 GPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNV 623
            G  IGIDLGTT SCV +    +  +I N +G+RTTPS V +T D E L+G +AK Q   NP NT +  KRLIGR+F+D  VQ D+   P+ ++A       +  +   + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V
Sbjct:    2 GKIIGIDLGTTNSCVSIMDGGKARVIENSEGDRTTPSIVAYTKDGEVLVGASAKRQAVTNPKNTFYAVKRLIGRKFTDGEVQKDISHVPYGILAHDNGDAWVQTS---DGKRMAPQEISARVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDV 166          
The following BLAST results are available for this feature:
BLAST of FC931753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_XANC58.416e-3850.00Chaperone protein dnaK OS=Xanthomonas campestris p... [more]
DNAK_RICRS8.416e-3846.71Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICRO8.416e-3846.71Chaperone protein dnaK OS=Rickettsia rickettsii (s... [more]
DNAK_RICCN8.416e-3846.71Chaperone protein dnaK OS=Rickettsia conorii GN=dn... [more]
DNAK_RICAE8.416e-3846.71Chaperone protein dnaK OS=Rickettsia africae (stra... [more]
DNAK_PSEU28.416e-3848.81Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_PSESM8.416e-3848.81Chaperone protein dnaK OS=Pseudomonas syringae pv.... [more]
DNAK_BURM18.416e-3852.38Chaperone protein dnaK OS=Burkholderia multivorans... [more]
DNAK_XANP21.099e-3752.73Chaperone protein dnaK OS=Xanthobacter autotrophic... [more]
DNAK_XANAC1.099e-3750.00Chaperone protein dnaK OS=Xanthomonas axonopodis p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34108F01EF PostHarvP1 Citrus clementina cDNA clone C34108F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931753 ID=FC931753; Name=FC931753; organism=Citrus clementina; type=EST; length=625bp
ACACATACAAGTTTTTTATTTTTTAGATTTGAGATCTATTTTTGTTTTTC
TTCGCTGTCAAAGCAAACTACTTTATTCTCCTTTTCCTTGCTTGAGTTTT
GATAATGGCCGGAAAAGGAGAGGGACCAGCGATCGGTATCGATTTGGGGA
CGACGTACTCCTGCGTCGGAGTCTGGCAGCATGACAGAGTCGAGATTATC
GCCAATGACCAAGGGAACCGGACGACGCCGTCTTATGTGGGGTTCACCGA
CACGGAGCGTTTGATCGGGGACGCTGCTAAGAACCAGGTCGCCATGAACC
CCACGAACACCGTCTTTGATGCAAAGAGGTTGATTGGTAGGAGATTCAGC
GATGCATCAGTCCAAGGCGATATGAAGCTATGGCCATTTAAGGTGATTGC
TGGACCTGCTGACAAGCCCATGATTGGTGTTAACTACAAGGGCGAAGAGA
AGCAGTTTGCTGCTGAGGAAATCTCGTCTATGGTGCTCATCAAGATGCGT
GAGATTGCTGAGGCTTACCTTGGCGCAACTATTAAGAATGCAGTCGTTAC
TGTCCCTGCTTACTTCAATGACTCACAGAGGCAGGCCACCAAGGATGCCG
GTGTCATTGCTGGGCTTAATGTGAT
back to top