FC931768

Overview
NameFC931768
Unique NameFC931768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length473
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4858 contig Ccv1_Contig4858:1..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: FUMC_PROMP (Fumarate hydratase class II OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=fumC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.365e-26
Identity = 66/159 (41.51%), Postives = 99/159 (62.26%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPAIGK-AIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRG-EKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            RS+ NF IG   E +P  ++ +  ++K+ AA  N + GL   + K  I++A  E+ +GK +  FPL +WQTGSGTQ+NMN NEVI+N AA       G    +HPND VN+SQS+NDTFP  + I+   +   +L+P++K L   L SKS +++  +K+
Sbjct:   29 RSIINFSIG--EELIPIELIYSLTVIKRAAAISNFKLGLINNVKKDLIIEACTEILDGKHDSQFPLKIWQTGSGTQTNMNINEVISNIAALKTNSGLGSHHPIHPNDDVNKSQSTNDTFPAAIQISVVTQIIKKLVPSIKELTKVLDSKSNKWKDLIKI 185          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_HAEIN (Aspartate ammonia-lyase OS=Haemophilus influenzae GN=aspA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.733e-25
Identity = 67/160 (41.88%), Postives = 95/160 (59.38%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEV-AEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF+I           VR   ++KK  A  N E G  P+ I KAI+ A  E+   GK  D FP  V+Q G+GT  NMN NEV+AN A E +GHK+GE  +++P DHVN SQS+ND +PT   I A   +  +LI  ++ LH+S  +K+ EF   +K+
Sbjct:   31 RAVENFNISNVTISDVPEFVRGMVMVKKATALANGELGAIPSDIAKAIVAACDEILTTGKCLDQFPSDVYQGGAGTSVNMNTNEVVANLALEKIGHKKGEYNVINPMDHVNASQSTNDAYPTGFRI-AVYNSILKLIDKIQYLHDSFDNKAKEFANILKM 189          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_HELPJ (Aspartate ammonia-lyase OS=Helicobacter pylori J99 GN=aspA PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.277e-24
Identity = 64/159 (40.25%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+ +NF I  ++       +++F  +KK AA  N + GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + I A  E  S L+  +K L ++   K+ EF   +K+
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAAALANAQLGLIDEKLKIAICHACDLLVDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKI-AIYERLSNLVAPMKALRDAFAQKAKEFAHVIKM 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_HELPY (Aspartate ammonia-lyase OS=Helicobacter pylori GN=aspA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.845e-24
Identity = 63/159 (39.62%), Postives = 96/159 (60.38%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGL-DPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+ +NF I  ++       +++F  +KK A   N++ GL D  +  AI  A   + +GK +D F + + Q G+GT +NMN NEVIAN A E +GH++GE +  HPNDHVNRSQS+ND +P+ + I A  E  S L+  +K L ++   K+ EF   +K+
Sbjct:   25 RASENFFITNDKLCSYPVFIKSFAQVKKAATLANVQLGLIDEKLKIAICHACDLLIDGKYHDQFIVDMIQGGAGTSTNMNMNEVIANLALEYMGHQKGEYQFCHPNDHVNRSQSTNDAYPSALKI-AIYERLSNLVAPMKALRDAFAQKAKEFAHVIKM 182          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_SHIFL (Aspartate ammonia-lyase OS=Shigella flexneri GN=aspA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.844e-23
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   I A   +  +L+  +  L      K+VEFQ  +K+
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRI-AVYSSLIKLVDAINQLREGFERKAVEFQDILKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_ECOLI (Aspartate ammonia-lyase OS=Escherichia coli (strain K12) GN=aspA PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.844e-23
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   I A   +  +L+  +  L      K+VEFQ  +K+
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRI-AVYSSLIKLVDAINQLREGFERKAVEFQDILKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_ECOL6 (Aspartate ammonia-lyase OS=Escherichia coli O6 GN=aspA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.844e-23
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   I A   +  +L+  +  L      K+VEFQ  +K+
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRI-AVYSSLIKLVDAINQLREGFERKAVEFQDILKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_ECO57 (Aspartate ammonia-lyase OS=Escherichia coli O157:H7 GN=aspA PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.844e-23
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDP-AIGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF I   +       VR   ++KK AA  N E    P ++  AI+ A  EV   GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDHVN+ QS+ND +PT   I A   +  +L+  +  L      K+VEFQ  +K+
Sbjct:   29 RAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRI-AVYSSLIKLVDAINQLREGFERKAVEFQDILKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_SERMA (Aspartate ammonia-lyase OS=Serratia marcescens GN=aspA PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.409e-23
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYGLDPA-IGKAIMQAAQEVAE-GKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R+++NF I   +       VR   ++KK AA  N E    P  I   I+QA  EV + GK  D FP+ V+Q G+GT  NMN NEV+AN   E++GH++GE + ++PNDH+N+ QS+ND +PT   I A   +N +LI  +  L      K+ EF+  +K+
Sbjct:   29 RAIENFYISNSKISDVPEFVRGMVMVKKAAAMANKELKTIPRKIADVIIQACDEVLDKGKCMDQFPVDVFQGGAGTSLNMNTNEVLANIGLELMGHQKGEYQYLNPNDHLNKCQSTNDAYPTGFRI-AVYASNQKLIDAINQLREGFDRKAKEFETILKM 187          
BLAST of FC931768 vs. ExPASy Swiss-Prot
Match: ASPA_PSEAE (Aspartate ammonia-lyase OS=Pseudomonas aeruginosa GN=aspA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.252e-20
Identity = 58/159 (36.48%), Postives = 91/159 (57.23%), Query Frame = 1
Query:    1 RSLQNFDIGGERERMPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGE-KIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFQGYVKL 471
            R++ NF + G        +V A  ++K+ AA  N + G L      AI +A   +  G  ++ F + + Q G+GT +NMNANEVIAN A E +GH +GE K +HPN+ VN +QS+ND +PT + +   +  +  L+ +L  L  +  +K VEF G +K+
Sbjct:   31 RAVNNFRLSGVPLSHYPKLVVALAMVKQAAADANRQLGHLPEDKHAAISEACARLIRGDFHEQFVVDMIQGGAGTSTNMNANEVIANIALEAMGHTKGEYKYLHPNNDVNMAQSTNDAYPTAIRLGLLL-GHDTLLASLDSLIQAFAAKGVEFAGVLKM 188          
The following BLAST results are available for this feature:
BLAST of FC931768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FUMC_PROMP1.365e-2641.51Fumarate hydratase class II OS=Prochlorococcus mar... [more]
ASPA_HAEIN5.733e-2541.88Aspartate ammonia-lyase OS=Haemophilus influenzae ... [more]
ASPA_HELPJ1.277e-2440.25Aspartate ammonia-lyase OS=Helicobacter pylori J99... [more]
ASPA_HELPY2.845e-2439.62Aspartate ammonia-lyase OS=Helicobacter pylori GN=... [more]
ASPA_SHIFL1.844e-2339.38Aspartate ammonia-lyase OS=Shigella flexneri GN=as... [more]
ASPA_ECOLI1.844e-2339.38Aspartate ammonia-lyase OS=Escherichia coli (strai... [more]
ASPA_ECOL61.844e-2339.38Aspartate ammonia-lyase OS=Escherichia coli O6 GN=... [more]
ASPA_ECO571.844e-2339.38Aspartate ammonia-lyase OS=Escherichia coli O157:H... [more]
ASPA_SERMA2.409e-2339.38Aspartate ammonia-lyase OS=Serratia marcescens GN=... [more]
ASPA_PSEAE4.252e-2036.48Aspartate ammonia-lyase OS=Pseudomonas aeruginosa ... [more]

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Properties
Property NameValue
Genbank descriptionC34201A04EF PostHarveN Citrus clementina cDNA clone C34201A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931768 ID=FC931768; Name=FC931768; organism=Citrus clementina; type=EST; length=473bp
AGGTCGTTGCAGAACTTTGATATTGGCGGCGAGCGGGAGCGAATGCCCGA
ACCAATTGTTCGTGCCTTTGGCATCCTCAAGAAATGTGCTGCCAAGGTGA
ACATGGAGTATGGTCTTGATCCAGCCATAGGGAAAGCAATTATGCAAGCA
GCGCAAGAAGTAGCTGAGGGGAAGCTAAATGATCACTTTCCACTTGTTGT
CTGGCAAACTGGCAGTGGCACTCAGAGTAATATGAATGCTAATGAGGTTA
TTGCTAATAGAGCAGCTGAGATTCTTGGCCATAAGCGTGGTGAAAAGATC
GTGCACCCAAATGACCATGTAAACAGATCTCAATCTTCAAATGACACGTT
CCCAACTGTAATGCATATCGCAGCTGCAATGGAAACAAATTCAAGATTAA
TTCCAAATTTGAAAGTTTTGCATAACTCACTACATTCAAAGTCTGTTGAA
TTTCAAGGATATGTTAAATTGGG
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