FC931771

Overview
NameFC931771
Unique NameFC931771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.024e-31
Identity = 74/165 (44.85%), Postives = 101/165 (61.21%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNK-----PYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M ++PARCY + ++K     PY +  +  GVP PKI+ + +G       ++ + V +   E+  +   ALEAAR+A +KY++   G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP G  ARV  GQ +L VR K  +  HA+EALRR   K P
Sbjct:    1 MPQKPARCYTKRRSKAFSGPPYTRKEYIHGVPPPKIQKFVMGNPH---GDYDYIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLP 162          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.149e-30
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   63 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            RPARCYR+IK  PY +  +  G P  +I  +D+G         FP    L+  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H +EA RRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLP 161          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.501e-30
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   63 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            RPARCY++IK  PY +  +  G P  +I  +D+G         FP    LV  E+  +  +ALEAAR    KY++K+ G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLP 161          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.702e-30
Identity = 72/158 (45.57%), Postives = 92/158 (58.23%), Query Frame = 3
Query:   63 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGV-DEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            RPARCY++IK  PY +  +  G P  +I  +D+G         F     LV  E+  +  +ALEAAR   +KY+ K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H +EALRRA  K P
Sbjct:    4 RPARCYKRIKGPPYTREEYIHGAPMIQIPKFDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLP 161          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 71/158 (44.94%), Postives = 93/158 (58.86%), Query Frame = 3
Query:   63 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDE-FPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            RPARCYR+IK  PY +  +  G P  +I  +D+G+        F     LV  E+  +  +ALEAAR    KY++K+ G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H +EALRRA  K P
Sbjct:    4 RPARCYRRIKGPPYTREEYIHGAPMIQIPKFDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLP 161          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.447e-30
Identity = 69/157 (43.95%), Postives = 93/157 (59.24%), Query Frame = 3
Query:   63 RPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            RP RCYR +   PY +  + +GVP PK+  + +G       EFP  V+LV+     +   ALEAAR+A NKY+ K  G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP G  ARV  GQ +L+V         A+EALRRA  K P
Sbjct:    5 RPNRCYRDVDKPPYTRKEYVKGVPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLP 158          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.659e-29
Identity = 72/164 (43.90%), Postives = 96/164 (58.54%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            M  RP++CYR+I    Y + ++ R VP PK+  Y  G   KG D FP  VHLV  +   +   ALE+ARI  NKY     G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  G  ARV  GQ ++++     N +HA+EALRR   K P + K
Sbjct:    1 MALRPSKCYREINKPAYTRKKYIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCK 161          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.659e-29
Identity = 68/160 (42.50%), Postives = 101/160 (63.12%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M R+PAR +R+++ +PY ++ +  G P  ++R++D+G K     +FP  + LV+ E   +   ALEAAR+  NKY+++ AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A+EALRRA  K P
Sbjct:    1 MARKPARMWRRLE-RPYTRTEYIDGAPGTRVRMFDMGNKSA---DFPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMP 156          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.649e-27
Identity = 70/160 (43.75%), Postives = 89/160 (55.62%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RP RCYR     PY +  + +  P   I  +D+G  K     F   + LV      + + ALEAAR   NKY+    G+  F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V+    N  HA+EALRRA  K P
Sbjct:    1 MPLRPGRCYRHFGTPPYTRLEYIKSNPPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 66/160 (41.25%), Postives = 90/160 (56.25%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPARCYR I+ + Y +  + R VP PK+  Y +G       EFP  V LVS     +   ALE++RIA NKY+    G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  G  A+V  GQ ++++         A+EALRR   K P
Sbjct:    1 MALRPARCYRTIERRSYTRKEYVRAVPQPKVVHYVMGNPSA---EFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLP 157          
The following BLAST results are available for this feature:
BLAST of FC931771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_HYPBU3.024e-3144.8550S ribosomal protein L10e OS=Hyperthermus butylic... [more]
RL10_PYRAR1.149e-3044.9450S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]
RL10_THENV1.501e-3044.9450S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_PYRAE5.702e-3045.5750S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_PYRIL7.447e-3044.9450S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_METJA7.447e-3043.9550S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_META31.659e-2943.9050S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_ARCFU1.659e-2942.5050S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_THEPD2.649e-2743.7550S ribosomal protein L10e OS=Thermofilum pendens ... [more]
RL10_METMP5.901e-2741.2550S ribosomal protein L10e OS=Methanococcus maripa... [more]

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Properties
Property NameValue
Genbank descriptionC34201A07EF PostHarveN Citrus clementina cDNA clone C34201A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931771 ID=FC931771; Name=FC931771; organism=Citrus clementina; type=EST; length=672bp
GACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTC
GCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCC
GTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGA
TCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGT
GTGCACTTGGTGTCTTGGGAAAAGGAGAGCGTATCTAGTGAAGCTCTTGA
GGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAG
ATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATC
AACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAG
GGGTGCTTTCGGTAAACCACAGGGCGCTTGTGCTAGAGTTGCCATTGGAC
AGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAA
GAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAATCATT
GTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAG
GTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAAATGCAAGCTTC
TTGGATGTCATGGACCCTTGGC
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