FC931771

Overview
NameFC931771
Unique NameFC931771
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15209 contig Ccv1_Contig15209:96..768. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRFU (50S ribosomal protein L10e OS=Pyrococcus furiosus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVSLHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKKDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_SULAC (50S ribosomal protein L10e OS=Sulfolobus acidocaldarius GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 67/166 (40.36%), Postives = 98/166 (59.04%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAK-FAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARV-AIGQVLLSVRCKDSNSLHAQEALRRAKFKFPGRQK 545
            M  RP RCYR+     Y +  +  G+P PKI  + +G       ++ + + L++ EK  +   ALEAAR+   KY++K  A +  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP G  AR+  +G++++ VR K  +   A+EAL+ A  K P R K
Sbjct:    1 MPLRPGRCYRKFSGPAYTRREYIPGIPMPKITKFVMGNVN---GDYDYELRLITTEKGQIRHNALEAARVIALKYLSKKLASEQNFALVVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARLEKLGELVMYVRVKKEHLEAAKEALKIASSKLPIRTK 163          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRHO (50S ribosomal protein L10e OS=Pyrococcus horikoshii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 65/160 (40.62%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RPA+  R +    Y +  + RG P PKI I+D+G       +F F V L + E   +   ALEAAR   N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  AR+   Q +LS+R    +   A E  RRA  KFP
Sbjct:    1 MALRPAKIDRYVDKPAYTRREYIRGAPGPKITIFDMG---NPAGDFEFEVALHTAEPVQIRQNALEAARQQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARLKRDQKILSIRVNRQHLKFAIEGARRAAMKFP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METS5 (50S ribosomal protein L10e OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 65/162 (40.12%), Postives = 92/162 (56.79%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVA-IGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  RP RCYR      Y +  +  GVP PKI  + +G  KK  D   F V L++ +   +   ALEAAR+   K M    G +  F+L V  +P HV+R NKM++ AGADRLQ GMR +FGKP G  AR+  +G +++++R K  +   A++A + A  K P
Sbjct:    1 MPLRPGRCYRHFSGPAYTRKEYIPGVPQPKITKFTMGDHKKDYD---FEVRLLTKQIGQIRHNALEAARVIALKQMTSMVGNETDFYLYVTKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARITKLGDLIMAIRVKKEHLEFAKKAFKVASSKLP 159          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 60/146 (41.10%), Postives = 86/146 (58.90%), Query Frame = 3
Query:   96 KPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            + Y +  + + +P  KI  YD+G       EFP  + +       ++  ALEAARIA N+YM + AG+  +HL++RV+P H++R N M + AGADR+Q GMR AFGKP    A V   Q ++++     N   A+EALRRA  KFP
Sbjct:    3 RAYTRREYIKKIPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFP 145          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_THEGJ (50S ribosomal protein L10e OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 64/160 (40.00%), Postives = 87/160 (54.37%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V   + +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVKKDQKILTVWVNEQHLKFALGAMHRAKMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.230e-24
Identity = 63/160 (39.38%), Postives = 94/160 (58.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M  +PAR Y +I    Y +  F  GVP PKI  +  G +KK   +F   + LV+ E   +   ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGADR+ +GMR AFG+P G  ARV  GQ+++  R   +N+   ++AL +A  K P
Sbjct:    1 MVTKPARMYTRITGPAYTRKEFMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METLZ (50S ribosomal protein L10e OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.099e-24
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M R+PAR YR +  K Y +  +  GVP  K+  +D+G      ++FP  +HL + E   +   A+EAARI  N+ + K  G++ FHL++R +P HVLR +K  + AGADR+  GMR AFGK  G  ARVA  Q + +V         A++AL  + +K P
Sbjct:    1 MVRKPARMYRNLAKKAYCRREYMGGVPGLKVVQFDMGNLS---EDFPVAIHLEALEACQIRHTAMEAARINMNRRLMKTVGRNNFHLKIRAYPHHVLREHKQATGAGADRVSEGMRLAFGKAVGTAARVAPRQRVFTVWTTPQYVDQAKDALLHSGYKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_PYRKO (50S ribosomal protein L10e OS=Pyrococcus kodakaraensis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.741e-24
Identity = 64/160 (40.00%), Postives = 86/160 (53.75%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            MG RPA+  R +    Y +  + RG P PKI I+D+G       EF + V L + +   +   ALEA RI  N+Y+ K  G+  +H ++RV+PF VLR N M +   ADR   GMR  FGKP G  ARV   Q +L+V     +   A  A+ RAK K P
Sbjct:    1 MGLRPAKIDRDVDKPAYTRREYIRGAPGPKITIFDMGNLSA---EFEYEVSLHAEQAMQIRQNALEAIRIQVNRYLQKNVGRSNYHFKIRVYPFQVLRENPMATGRKADRYGNGMRRPFGKPIGLAARVRKDQKILTVWVNGQHLKFALGAMHRAKMKLP 157          
BLAST of FC931771 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 64/160 (40.00%), Postives = 93/160 (58.13%), Query Frame = 3
Query:   54 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKESVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGACARVAIGQVLLSVRCKDSNSLHAQEALRRAKFKFP 533
            M R+P   YR ++ + + + ++  GVP  ++  YD+G K      FP  + LV+ EK  +   ALEAARI  N+++   AGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  G  ARV   Q L +V  +  N   A++AL  A  K P
Sbjct:    1 MVRKPGSMYRNVRQRSFTRRKYMGGVPGSQVIHYDMGDKANTT--FPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLP 158          
The following BLAST results are available for this feature:
BLAST of FC931771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRFU5.523e-2540.6350S ribosomal protein L10e OS=Pyrococcus furiosus ... [more]
RL10_SULAC7.213e-2540.3650S ribosomal protein L10e OS=Sulfolobus acidocald... [more]
RL10_PYRHO7.213e-2540.6350S ribosomal protein L10e OS=Pyrococcus horikoshi... [more]
RL10_METS57.213e-2540.1250S ribosomal protein L10e OS=Metallosphaera sedul... [more]
RL10_METTH9.421e-2541.1050S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_THEGJ1.230e-2440.0050S ribosomal protein L10e OS=Thermococcus gammato... [more]
RL10_PICTO1.230e-2439.3850S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_METLZ2.099e-2439.3850S ribosomal protein L10e OS=Methanocorpusculum l... [more]
RL10_PYRKO2.741e-2440.0050S ribosomal protein L10e OS=Pyrococcus kodakarae... [more]
RL10_METMA3.580e-2440.0050S ribosomal protein L10e OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC34201A07EF PostHarveN Citrus clementina cDNA clone C34201A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931771 ID=FC931771; Name=FC931771; organism=Citrus clementina; type=EST; length=672bp
GACTTTTCTTGGGTTTCTGGTTTAGTTGCTGAATACCTACCAGGGCTTTC
GCCATGGGAAGAAGACCTGCTAGGTGTTATCGCCAGATAAAAAATAAGCC
GTATCCGAAATCACGCTTTTGTCGTGGTGTGCCTGATCCCAAGATCAGGA
TCTATGATGTTGGAATGAAGAAGAAAGGGGTTGATGAATTCCCTTTCTGT
GTGCACTTGGTGTCTTGGGAAAAGGAGAGCGTATCTAGTGAAGCTCTTGA
GGCTGCTCGAATTGCTTGCAACAAATATATGGCCAAGTTTGCCGGGAAAG
ATGCTTTCCATTTGCGAGTCCGTGTTCACCCATTCCATGTCTTGCGTATC
AACAAAATGCTTTCATGTGCTGGAGCTGATAGGCTTCAAACTGGTATGAG
GGGTGCTTTCGGTAAACCACAGGGCGCTTGTGCTAGAGTTGCCATTGGAC
AGGTCCTCCTGTCAGTTCGCTGCAAGGATAGCAATAGTCTTCATGCTCAA
GAGGCTCTTCGTCGTGCAAAGTTCAAGTTTCCTGGTCGCCAAAAATCATT
GTCAGCAGAAAGTGGGGTTTCACCAAGTTTAGCCGCAGTGATTATTTGAG
GTTCAAGTCAGAGAACCGTATTGTGCCCGATGGTGTTAAATGCAAGCTTC
TTGGATGTCATGGACCCTTGGC
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