FC931775

Overview
NameFC931775
Unique NameFC931775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931775_ssr15 microsatellite FC931775_ssr15:15..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_SCHPO (Adenosylhomocysteinase OS=Schizosaccharomyces pombe GN=SPBC8D2.18c PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 80/139 (57.55%), Postives = 97/139 (69.78%), Query Frame = 2
Query:  164 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGP-DLIVDDGGDATLLIHE 577
            + +KV D+S A FGR E+E+AE EMPGL+A R ++  SQP KGA+I G LHMTIQTAVLIETL ALGAEV W SCNI+STQDH              W+GET +EY WC E+ L   P G P ++I+DDGGD T L+HE
Sbjct:    4 QNYKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKPLNMILDDGGDLTALVHE 142          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_PROM0 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9301) GN=ahcY PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.473e-39
Identity = 85/155 (54.84%), Postives = 103/155 (66.45%), Query Frame = 2
Query:  131 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            M ++     S  +F + D+S +DFGR EI++AE EMPGLMA R ++   +P KGAKI GSLHMTIQTAVLIETL  LGAEV+W SCNIFSTQDH               +GETL EYW  T   LDWG    P++I+DDGGDAT L+  G KAE+
Sbjct:    1 MVIANSVKTSTPKFIISDISLSDFGRKEIKIAETEMPGLMALRDKYQSEKPLKGAKIAGSLHMTIQTAVLIETLVDLGAEVKWASCNIFSTQDHAAAAIADQGISVFAKKGETLDEYWQYTHYILDWG-SDFPNMILDDGGDATGLLILGSKAEK 154          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_NOVAD (Adenosylhomocysteinase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=ahcY PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 86/162 (53.09%), Postives = 103/162 (63.58%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEF 652
            ++ V D+  ADFGR EI +AE EMPGLMA R EFG SQP KGA+ITGSLHMTIQTAVLIETL ALGAEVRW +CNIFSTQDH               +GE+L EYW       DWG     ++I+DDGGDAT+    G +     E    L +P++ +  EF
Sbjct:   10 DYVVADIGLADFGRAEIRIAETEMPGLMALREEFGASQPLKGARITGSLHMTIQTAVLIETLVALGAEVRWATCNIFSTQDHAAAAIAAAGIPVFAVKGESLAEYWDYVGSIFDWGDQTA-NMILDDGGDATMFALWGARV----EAGEPLFEPSNAEEIEF 166          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_NITEU (Adenosylhomocysteinase OS=Nitrosomonas europaea GN=ahcY PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 90/176 (51.14%), Postives = 109/176 (61.93%), Query Frame = 2
Query:  173 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGG--PDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDP---ASTDNAEFQIVLTIIRDGL 685
            KV DLS AD+GR EI +AE EMPGLMA R ++   +P  GA+I GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH              ++GE+L+EYW    +  +W   G    ++I+DDGGDATLL+  G KAE          DP   A+  N E Q++   IR  L
Sbjct:   18 KVADLSLADWGRKEIAIAETEMPGLMALREQYADKKPLAGARIAGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAARNIPVFAYKGESLEEYWDYAHQIFEWASDGSHTANMILDDGGDATLLLILGSKAER---------DPSVIANPTNEEEQVLFASIRSRL 184          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_DROME (Adenosylhomocysteinase OS=Drosophila melanogaster GN=Ahcy13 PE=1 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 77/136 (56.62%), Postives = 98/136 (72.06%), Query Frame = 2
Query:  170 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            +KV D+S A++GR  I +AE EMPGLMACR ++GPS+P KGA+ITG LHMT+QTAVLIETL  LGA+V+W SCNIFSTQD+              W+GET +EY WC E+ L +  G   ++I+DDGGD T L+HE
Sbjct:    6 YKVADISLAEWGRKAIIIAENEMPGLMACRKKYGPSKPLKGARITGCLHMTVQTAVLIETLVELGAQVQWSSCNIFSTQDNAAAAIAATGVPVYAWKGETDEEYMWCIEQTLVFPDGQPLNMILDDGGDLTNLVHE 141          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BURP8 (Adenosylhomocysteinase OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=ahcY PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.335e-39
Identity = 81/155 (52.26%), Postives = 104/155 (67.10%), Query Frame = 2
Query:  131 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE 595
            M  +V  S   ++F V DLS AD+GR E+++AE EMPGL+  R E+   QP KGA++ GSLHMTIQT VLIETL ALGA+VRW SCNIFSTQDH              ++GE+L EYW  + +  +W  G   ++I+DDGGDATLL+  G KAE+
Sbjct:    1 MNAAVIDSKHSQDFIVADLSLADWGRKELDIAETEMPGLVQIREEYKAQQPLKGARVAGSLHMTIQTGVLIETLKALGADVRWASCNIFSTQDHAAAAIAKGGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEK 155          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_LEIDO (Adenosylhomocysteinase OS=Leishmania donovani PE=3 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.592e-38
Identity = 80/136 (58.82%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGG-PDLIVDDGGDATLLI 571
            ++KVKD+S A++GR  IELAE EMPGLM  R E+GPSQP KGAKI G LHMT+QTAVLIETL ALGA+VRW SCNIFSTQD+              W+GET +EY WC  + +    G G P++I+DDGGD T L+
Sbjct:    3 DYKVKDISLAEWGRKAIELAENEMPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIETLKALGADVRWSSCNIFSTQDNAAAAIAKAGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLPNMILDDGGDLTNLV 138          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_YEAST (Adenosylhomocysteinase OS=Saccharomyces cerevisiae GN=SAH1 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 87/163 (53.37%), Postives = 104/163 (63.80%), Query Frame = 2
Query:  152 SASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKAL-DWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPAST 637
            SA  + +K+ D+S A FGR EIELAE EMPGLMA R  +G  QP KGA+I G LHMTIQTAVLIETL ALGAEV W SCNI+STQDH              W+GET +EY WC E+ L  +      +LI+DDGGD T L+HE  K  E+ E    L +  +T
Sbjct:    2 SAPAQNYKIADISLAAFGRKEIELAEHEMPGLMAIRKAYGDVQPLKGARIAGCLHMTIQTAVLIETLVALGAEVTWSSCNIYSTQDHAAAAIAASGVPVFAWKGETEEEYLWCIEQQLFAFKDNKKLNLILDDGGDLTTLVHE--KHPEMLEDCFGLSEETTT 162          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_DICDI (Adenosylhomocysteinase OS=Dictyostelium discoideum GN=sahA PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.547e-38
Identity = 78/136 (57.35%), Postives = 97/136 (71.32%), Query Frame = 2
Query:  170 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHE 577
            +KVKD+S A +GR EIE+AE EMPGLM  R ++GP+Q  KGA+I G LHMTIQTAVLIETLTALGA+V+W SCNIFSTQD               W+GET +EY WC E+ + +  G   ++I+DDGGD T L+HE
Sbjct:    6 YKVKDISLAAWGRKEIEIAENEMPGLMTLRKKYGPAQILKGARIAGCLHMTIQTAVLIETLTALGAQVQWSSCNIFSTQDQAAAAIAATGVPVYAWKGETEEEYNWCVEQTIVFQDGQPLNMILDDGGDLTNLVHE 141          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_ROSDO (Adenosylhomocysteinase OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=ahcY PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.051e-38
Identity = 79/143 (55.24%), Postives = 104/143 (72.73%), Query Frame = 2
Query:  164 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 592
            ++F VKD++ A+FGR E+++AE EMPGLMA RAE+G S+P  GA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQDH               +G++L+E+W   +++  +    GP+LI+DDGGDATL +  G +AE
Sbjct:    3 KDFIVKDIALAEFGRKELDIAETEMPGLMALRAEYGDSKPLAGARIVGSLHMTIQTAVLIETLVALGADVRWASCNIFSTQDHAAAAIAAGGTPVFAIKGQSLEEHWDYLDRSFMF--EDGPNLILDDGGDATLYVLLGARAE 143          
The following BLAST results are available for this feature:
BLAST of FC931775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_SCHPO5.473e-3957.55Adenosylhomocysteinase OS=Schizosaccharomyces pomb... [more]
SAHH_PROM05.473e-3954.84Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_NOVAD9.335e-3953.09Adenosylhomocysteinase OS=Novosphingobium aromatic... [more]
SAHH_NITEU9.335e-3951.14Adenosylhomocysteinase OS=Nitrosomonas europaea GN... [more]
SAHH_DROME9.335e-3956.62Adenosylhomocysteinase OS=Drosophila melanogaster ... [more]
SAHH_BURP89.335e-3952.26Adenosylhomocysteinase OS=Burkholderia phymatum (s... [more]
SAHH_LEIDO1.592e-3858.82Adenosylhomocysteinase OS=Leishmania donovani PE=3... [more]
SAHH_YEAST2.716e-3853.37Adenosylhomocysteinase OS=Saccharomyces cerevisiae... [more]
SAHH_DICDI3.547e-3857.35Adenosylhomocysteinase OS=Dictyostelium discoideum... [more]
SAHH_ROSDO6.051e-3855.24Adenosylhomocysteinase OS=Roseobacter denitrifican... [more]

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Properties
Property NameValue
Genbank descriptionC34201A11EF PostHarveN Citrus clementina cDNA clone C34201A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931775 ID=FC931775; Name=FC931775; organism=Citrus clementina; type=EST; length=693bp
GTCGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTT
GTTTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTC
TTGTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAA
ATCCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACT
TCGGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATG
GCTTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGAT
CACCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACGC
TCACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCA
ACCCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTT
TGCCTGGGAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAG
CCCTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGT
GGTGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTA
CGAGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGT
TTCAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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