FC931775

Overview
NameFC931775
Unique NameFC931775
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length693
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931775_ssr15 microsatellite FC931775_ssr15:15..28. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_DESDG (Adenosylhomocysteinase OS=Desulfovibrio desulfuricans (strain G20) GN=ahcY PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.368e-50
Identity = 105/178 (58.99%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  167 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEE---IYEKTGKLPDPASTDNAEFQIVLTIIRDGLK 688
            E KVKDLSQADFG  E++L+E EMPGLM   A+ G  +P KG K+TGSLHMTIQTA+LI+TL  LGA++RW SCNIFSTQDH               W+GETL+EYWWCTE AL W  G GPDLIVDDGGDAT+LIH+GV+AE+   + EK        S DN EFQIV+  I   +K
Sbjct:   15 ENKVKDLSQADFGYKEMQLSEREMPGLMELIAKHGAEKPLKGLKVTGSLHMTIQTAMLIKTLYELGADIRWASCNIFSTQDHAAAAIADSGMAKVFAWKGETLEEYWWCTEMALTWPDGSGPDLIVDDGGDATMLIHKGVEAEKNPALLEK--------SYDNKEFQIVMNRIALSMK 184          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_PLACH (Adenosylhomocysteinase OS=Plasmodium chabaudi GN=PC000295.02.0 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.467e-49
Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 2
Query:  173 KVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGG-GPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGL 685
            K+KDLS A FG+L++E++E EMPGLM  R E+   +P KGAKITG LHMTI+TA+L+ETL  LGA++RWCSCNI+ST D+               W GETL+EYWWC EKAL WG  G GPDLIVDDG DA+ L+H+G + E++YE+   LPDP +  N E +  L++I+  +
Sbjct:    7 KIKDLSLAPFGKLQMEISETEMPGLMTIREEYEKLKPLKGAKITGCLHMTIETALLMETLQKLGAKLRWCSCNIYSTLDYAAAAVSTLENVSVFAWRGETLEEYWWCVEKALTWGENGEGPDLIVDDGADASYLVHKGAEYEKLYEEKKILPDPETGKNEEERCFLSLIKSSI 179          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BACFR (Adenosylhomocysteinase OS=Bacteroides fragilis GN=ahcY PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.895e-48
Identity = 91/141 (64.54%), Postives = 109/141 (77.30%), Query Frame = 2
Query:  170 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 592
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQDH              W+GETL +YWWCT +AL++  G GP +IVDDGGDAT++IH G +AE
Sbjct:   26 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGETLADYWWCTLQALNFEGGKGPTVIVDDGGDATMMIHVGYEAE 166          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.100e-47
Identity = 90/141 (63.83%), Postives = 108/141 (76.60%), Query Frame = 2
Query:  170 FKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAE 592
            +KV D++ ADFGR EI+LAE EMPGLMA R ++G S+P KGA+I GSLHMTIQTAVLIETL ALGAEVRWCSCNI+STQDH              W+GE L +YWWCT +AL++  G GP++IVDDGGDAT++IH G  AE
Sbjct:   15 YKVADITLADFGRKEIDLAEKEMPGLMALREKYGESKPLKGARIMGSLHMTIQTAVLIETLVALGAEVRWCSCNIYSTQDHAAAAIAASGVAVFAWKGENLADYWWCTLQALNFPGGKGPNVIVDDGGDATMMIHVGYDAE 155          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_CHLL2 (Adenosylhomocysteinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.181e-47
Identity = 93/159 (58.49%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  155 ASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPA 631
            A+   +KV D++ A++GR EIE+AE EMPGLMA R ++   +P KGA+ITGSLHMTIQTAVLIETL  LGAEVRW SCNIFSTQDH              W+GE+L EYWWCT + L++  G GP+LIVDDGGDATL+IH G K E   E   K+P  A
Sbjct:    5 ATALAYKVADITLAEWGRKEIEIAEKEMPGLMATRRKYAGQKPLKGARITGSLHMTIQTAVLIETLVDLGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAWKGESLDEYWWCTRQILEFEDGKGPNLIVDDGGDATLMIHLGYKIENNPELLEKVPGNA 163          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_MYCUA (Adenosylhomocysteinase OS=Mycobacterium ulcerans (strain Agy99) GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.460e-47
Identity = 95/183 (51.91%), Postives = 123/183 (67.21%), Query Frame = 2
Query:  158 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGP-DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIR 676
            +G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       W+GE+L+EYWWC E+ L W     P ++I+DDGGDAT+L+  G++    YEK G +P     D+AE+++ L ++R
Sbjct:   14 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPEEPKGVPVFAWKGESLEEYWWCAEQMLTWPDSDKPANMILDDGGDATMLVLRGMQ----YEKAGVVPPAEEDDSAEWKVFLGLLR 192          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_MYCMM (Adenosylhomocysteinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ahcY PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.460e-47
Identity = 95/183 (51.91%), Postives = 123/183 (67.21%), Query Frame = 2
Query:  158 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGP-DLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIR 676
            +G +FK+ DLS ADFGR E+ +AE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       W+GE+L+EYWWC E+ L W     P ++I+DDGGDAT+L+  G++    YEK G +P     D+AE+++ L ++R
Sbjct:   14 NGIDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPEEPKGVPVFAWKGESLEEYWWCAEQMLTWPDSDKPANMILDDGGDATMLVLRGMQ----YEKAGVVPPAEEDDSAEWKVFLGLLR 192          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLE (Adenosylhomocysteinase OS=Mycobacterium leprae GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.216e-46
Identity = 97/183 (53.01%), Postives = 123/183 (67.21%), Query Frame = 2
Query:  158 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIR 676
            +G +FKV DLS A+FGR E++LAE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       W+GETL+EYWW  E+ L W  P    ++I+DDGGDAT+L+  GV+    YEK G +P     D+AE+++ L ++R
Sbjct:   14 NGIDFKVADLSLANFGRKELDLAEYEMPGLMSLRHEYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPYGTPEEPKGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPVNMILDDGGDATMLVLRGVQ----YEKAGVVPPAEVDDSAEWKVFLNLLR 192          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLB (Adenosylhomocysteinase OS=Mycobacterium leprae (strain Br4923) GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.216e-46
Identity = 97/183 (53.01%), Postives = 123/183 (67.21%), Query Frame = 2
Query:  158 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH---------XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDW-GPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPASTDNAEFQIVLTIIR 676
            +G +FKV DLS A+FGR E++LAE EMPGLM+ R E+   QP KGA+I+GSLHMT+QTAVLIETLTALGAEVRW SCNIFSTQDH                       W+GETL+EYWW  E+ L W  P    ++I+DDGGDAT+L+  GV+    YEK G +P     D+AE+++ L ++R
Sbjct:   14 NGIDFKVADLSLANFGRKELDLAEYEMPGLMSLRHEYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHAAAAVVVGPYGTPEEPKGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPVNMILDDGGDATMLVLRGVQ----YEKAGVVPPAEVDDSAEWKVFLNLLR 192          
BLAST of FC931775 vs. ExPASy Swiss-Prot
Match: SAHH_DESVV (Adenosylhomocysteinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.216e-46
Identity = 95/184 (51.63%), Postives = 121/184 (65.76%), Query Frame = 2
Query:  128 TMALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH-XXXXXXXXXXXXXXWEGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEIYEKTGKLPDPA----STDNAEFQIVL 664
            T A   +K     + KV D+S AD+GR +++L+E EMPGLM    ++G ++P KG K+TGSLHMTIQTA+LI TL  LGA++RW SCNIFSTQDH               W+GETL++YWWCTE AL W  G GPDL+VDDGGDATL IH+GV+ E          DP+    + DN EFQI++
Sbjct:    2 TDAKRAQKLDLSLDHKVADMSLADYGRKDLQLSEREMPGLMELIRKYGGTKPLKGLKVTGSLHMTIQTAMLIRTLYELGADIRWASCNIFSTQDHAAAAIAASGMAKVFAWKGETLEDYWWCTEMALTWPDGSGPDLLVDDGGDATLFIHKGVEVEN---------DPSLLKKAYDNKEFQIIM 176          
The following BLAST results are available for this feature:
BLAST of FC931775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_DESDG2.368e-5058.99Adenosylhomocysteinase OS=Desulfovibrio desulfuric... [more]
SAHH_PLACH4.467e-4953.76Adenosylhomocysteinase OS=Plasmodium chabaudi GN=P... [more]
SAHH_BACFR2.895e-4864.54Adenosylhomocysteinase OS=Bacteroides fragilis GN=... [more]
SAHH_BACTN1.100e-4763.83Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_CHLL24.181e-4758.49Adenosylhomocysteinase OS=Chlorobium limicola (str... [more]
SAHH_MYCUA5.460e-4751.91Adenosylhomocysteinase OS=Mycobacterium ulcerans (... [more]
SAHH_MYCMM5.460e-4751.91Adenosylhomocysteinase OS=Mycobacterium marinum (s... [more]
SAHH_MYCLE1.216e-4653.01Adenosylhomocysteinase OS=Mycobacterium leprae GN=... [more]
SAHH_MYCLB1.216e-4653.01Adenosylhomocysteinase OS=Mycobacterium leprae (st... [more]
SAHH_DESVV1.216e-4651.63Adenosylhomocysteinase OS=Desulfovibrio vulgaris s... [more]

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Properties
Property NameValue
Genbank descriptionC34201A11EF PostHarveN Citrus clementina cDNA clone C34201A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931775 ID=FC931775; Name=FC931775; organism=Citrus clementina; type=EST; length=693bp
GTCGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTT
GTTTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTC
TTGTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAA
ATCCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACT
TCGGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATG
GCTTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGAT
CACCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACGC
TCACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCA
ACCCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTT
TGCCTGGGAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAG
CCCTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGT
GGTGACGCCACGTTGTTGATCCACGAGGGAGTCAAAGCTGAGGAGATCTA
CGAGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGT
TTCAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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