FC931780

Overview
NameFC931780
Unique NameFC931780
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15392 contig Ccv1_Contig15392:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 75/203 (36.95%), Postives = 120/203 (59.11%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIAS--LLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALFNXNA 698
            +GV YG  A++LP P +V   ++ Q  I  V+++D N + L+AF +T+I + + V N D+ A ++  +   +W+ N++LP++P T   YI +G E  +T D  + AS  ++PAM+ + +AL    LS  ++VST  SLGILS S PPS G F   Y       +LEF  + KSPFM+  YPY+ ++      +L+Y LF  ++
Sbjct:   26 VGVCYGRSADDLPTPSKVVQLIQ-QHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAE--STDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSY-AYFLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSS 224          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13D_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41B PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 77/208 (37.02%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   81 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALFN 689
            CN     A  +IGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+     I   I+EF  +   P +   YPYFG    T    L+YALFN
Sbjct:   25 CNIQITGAQSNIGVCYGEIANNLPSEQDVINLYKANG-IRKMRIYYPDTNIFKALNGSNIEIILEVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPTNNGQYSQFLLHAMKNVYNALAAAGLQDKIKVSTATYSGLLANTYPPKDSIFREELKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFN 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13C_TOBAC (Glucan endo-1,3-beta-glucosidase OS=Nicotiana tabacum GN=SP41A PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 74/208 (35.58%), Postives = 110/208 (52.88%), Query Frame = 3
Query:   81 CNAITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALFN 689
            CN     A  +IGV YG IANNLP  Q V N  K    I ++++++++    ++   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+  +++      LL AM  + +AL AA L   ++V+T    G+L+ + PP    FR+ +   I   I+EF  +   P +   YPYFG    T    L+YALFN
Sbjct:   25 CNIQMTGAQSNIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYNSDTNIFKSLNGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPSNNGQYSQFLLHAMENVYNALAAAGLQDKIKVTTATYSGLLANTYPPKDSIFREEFKSFI-NPIIEFLARNNLPLLANIYPYFGHIYNTVDVPLSYALFN 230          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_HORVU (Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.053e-24
Identity = 71/205 (34.63%), Postives = 113/205 (55.12%), Query Frame = 3
Query:   87 AITPSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQ----TLNYALF 686
            A  P++  SIGV YG I NNLP    V    +++  I+ ++++ A+ + L A  ++ I + + +GN  +  +A   + A SWV NN+ P++P    +YI  GNE+   + +    S+LPAMR L +AL AA L +++VST      ++ S PPS G F+  Y   + AR+L     T +P +   YPYF ++      +LNYA F
Sbjct:   20 AAVPTSVQSIGVCYGVIGNNLPSRSDVVQLYRSKG-INGMRIYFADGQALSALRNSGIGLILDIGNDQLANIAASTSNAASWVQNNVRPYYPAVNIKYIAAGNEVQGGATQ----SILPAMRNLNAALSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKNAYMTDV-ARLL---ASTGAPLLANVYPYFAYRDNPGSISLNYATF 215          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_BRACM (Glucan endo-1,3-beta-glucosidase OS=Brassica campestris GN=BGL PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.918e-24
Identity = 71/203 (34.98%), Postives = 112/203 (55.17%), Query Frame = 3
Query:   99 SAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF--KPQTLNYALFNXNA 698
            + A  IGV +G + NN+P P +V    K Q +I R++++  NP+ L A   +NI   + V NGD+  LA   A A +WV +N+  ++    F+YI +GNE+         A+L+ AM+ +  AL AA LS+++VST   +G    + PPS GRF+  Y R     ++ F    +SP +V  Y YFG+  +  +L +AL   N+
Sbjct:   22 TTAGQIGVCFGQMGNNIPNPSEVVAMFK-QYSIPRMRMYGPNPDALNALRGSNIEFILDVPNGDLKRLADSQAEANTWVRDNVQKYN-DVRFKYISVGNEVKPGEPGA--AALIQAMQNIDRALSAAGLSNIKVSTTTFMGPSRNTYPPSRGRFKDEY-RNFLQPVIGFLVNKRSPLLVNIYTYFGYMNRDVSLQFALLQPNS 219          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13L_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL153 OS=Nicotiana tabacum GN=GGL4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.389e-23
Identity = 71/199 (35.68%), Postives = 103/199 (51.76%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANL-SSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            A SIGV YG IANNLP  Q V N  K    I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GNE+   ++      LL AM  + +AL A+ L   ++V+T    G+L+ + PP    FR  ++  I   I++F  Q   P +   YPYF     T    L+YALF
Sbjct:   29 AQSIGVCYGKIANNLPSEQDVINLYKANG-IRKMRIYYPDKNIFKALKGSNIEIILDVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNEVSPINNGQYSQFLLHAMENVYNALAASGLQDKIKVTTATYSGLLANTYPPKASIFRGEFNSFI-NPIIQFLAQNNLPLLANVYPYFVHISNTADVPLSYALF 225          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13K_TOBAC (Glucan endo-1,3-beta-glucosidase, acidic isoform GL161 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 71/199 (35.68%), Postives = 104/199 (52.26%), Query Frame = 3
Query:  105 ADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSS-VQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            A SIGV YG  ANNLP  Q V N L     I +++++  +    +A   +NI + + V N D+ ALA    A  WV +NI  H P   F+YI +GN++  T++      LL AM+ + +AL AA L   ++VST    G+L+ + PP    FR+ +   I   I++F  +   P +   YPYF     T    L+YALF
Sbjct:    9 AQSIGVCYGKAANNLPSDQDVIN-LYNANGIRKLRIYYPDKNIFKALNGSNIEIILGVPNQDLEALANSSIANGWVQDNIRSHFPYVKFKYISIGNKVSPTNNDQYSEFLLQAMKNVYNALAAAGLQDMIKVSTVTYSGVLANTYPPERSIFREEFKSFI-NPIIQFLARNNLPLLANVYPYFVHVSNTADVSLSYALF 205          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13D_HORVU (Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.426e-23
Identity = 71/201 (35.32%), Postives = 104/201 (51.74%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALA-KLPAAQSWVANNILPHHPQTI-FRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGF----KPQTLNYALFNXNA 698
            IGV YG IANNLPP ++V    +++  I  ++++   P+ +RA   + I + +   N D+  LA  L AA SWV  N+ P+H   +  RYI +GNEI   + +    S+L AMR L  AL AA L  ++VST     +++ S PPS+  F + Y       I      T +P +   YPYF +    +   LNYA F   A
Sbjct:    1 IGVCYGIIANNLPPRREVVQLYRSKG-ITNMRIYSVQPQAIRALHGSGIRLMLGTTNNDVAVLAGSLSAATSWVHANVKPYHSAGVTIRYIAVGNEITGGAAQ----SILAAMRNLNKALAAARLGGIKVSTAVRFDVITNSFPPSSAVFAQPY----MVDIARHLASTNAPLLANVYPYFAYSGNPRDIKLNYATFQPGA 192          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: GUB2_HORVU (Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.780e-23
Identity = 74/203 (36.45%), Postives = 107/203 (52.71%), Query Frame = 3
Query:   96 PSAADSIGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPAAQ-SWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLSSVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFM--VYPYPYFGFKPQTLN--YALFN 689
            P + +SIGV YG  ANNLP    V +  K    I  ++L+  N   L+A   T I V V   N  +  LA  PAA  SWV +NI  + P+  FRY+ +GNE+   + +    +L+PAM+ +  AL AA L  ++V+T  S  IL    PPS G F  G        +++F  +T +P M  +YPY  + + P  ++  YALFN
Sbjct:    1 PPSVESIGVCYGMSANNLPAASTVVSMFKFNG-IKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLSNLAASPAAAASWVKSNIQAY-PKVSFRYVCVGNEVAGGATR----NLVPAMKNVHGALVAAGLGHIKVTTSVSQAILGVFSPPSAGSF-TGEAAAFMGPVVQFLARTNAPLMANIYPYLAWAYNPSAMDMGYALFN 196          
BLAST of FC931780 vs. ExPASy Swiss-Prot
Match: E13B_PRUPE (Glucan endo-1,3-beta-glucosidase, basic isoform OS=Prunus persica GN=GNS1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.549e-23
Identity = 70/197 (35.53%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  114 IGVNYGAIANNLPPPQQVANFLKTQTTIDRVKLFDANPEFLRAFAHTNIPVTVTVGNGDIPALAKLPA-AQSWVANNILPHHPQTIFRYIVLGNEILATSDKVLIASLLPAMRTLKSALDAANLS-SVQVSTPHSLGILSTSEPPSTGRFRKGYDRLIFARILEFHRQTKSPFMVYPYPYFGFKPQT----LNYALF 686
            IGV  G + ++LPP  +V    KT   I R++L+D NP  L A   +NI + + V N ++  +A   A A +WV NN+  ++    F+YI +GNE+  +        L+PAMR ++ A+  A L+  ++VST    G+L  + PPS G F+  Y+ L++  I+ F    +SP +V  YPYF +   T    L+YALF
Sbjct:   40 IGVCNGMVGDDLPPQAEVVALYKTNN-IPRMRLYDPNPAALEALRGSNIKLLLGVPNENLQYIALSQANANAWVQNNVR-NYANVKFKYIAVGNEVKPSDS--FAQFLVPAMRNIQEAISLAGLAKKIKVSTAIDTGVLGETFPPSIGSFKSEYNALLYP-IIRFLVSHQSPLLVNLYPYFAYSGNTQDIRLDYALF 231          
The following BLAST results are available for this feature:
BLAST of FC931780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
E1313_ARATH5.052e-2736.95Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
E13D_TOBAC4.277e-2637.02Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13C_TOBAC7.295e-2635.58Glucan endo-1,3-beta-glucosidase OS=Nicotiana taba... [more]
E13B_HORVU1.053e-2434.63Glucan endo-1,3-beta-glucosidase GII OS=Hordeum vu... [more]
E13B_BRACM8.918e-2434.98Glucan endo-1,3-beta-glucosidase OS=Brassica campe... [more]
E13L_TOBAC3.389e-2335.68Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13K_TOBAC4.426e-2335.68Glucan endo-1,3-beta-glucosidase, acidic isoform G... [more]
E13D_HORVU4.426e-2335.32Glucan endo-1,3-beta-glucosidase GIV OS=Hordeum vu... [more]
GUB2_HORVU5.780e-2336.45Lichenase-2 (Fragment) OS=Hordeum vulgare PE=1 SV=... [more]
E13B_PRUPE7.549e-2335.53Glucan endo-1,3-beta-glucosidase, basic isoform OS... [more]

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Properties
Property NameValue
Genbank descriptionC34201B04EF PostHarveN Citrus clementina cDNA clone C34201B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931780 ID=FC931780; Name=FC931780; organism=Citrus clementina; type=EST; length=712bp
GCTCCTTCGCTTCTCAAATCATGGCTGTTACTGTTACTAAACTCTCTCAA
TTCCTCCTCTTCCTCTTCCTCTCCCTGTCTTGCAACGCCATCACCCCCTC
CGCCGCTGACTCCATCGGAGTCAACTACGGCGCCATCGCCAACAACCTCC
CGCCACCTCAGCAAGTAGCCAATTTCCTCAAAACCCAAACCACCATAGAC
CGCGTCAAGCTCTTCGACGCCAACCCCGAATTCCTCCGCGCCTTCGCCCA
CACAAACATCCCCGTCACCGTCACAGTCGGCAACGGCGACATACCTGCCC
TCGCAAAACTCCCCGCCGCCCAGTCCTGGGTCGCTAACAACATCCTGCCG
CATCACCCCCAGACCATCTTCAGATACATCGTCCTCGGCAACGAAATCTT
GGCCACGTCGGATAAAGTCCTCATCGCTTCTCTCCTGCCCGCCATGAGAA
CTCTTAAATCAGCTCTCGATGCTGCCAATCTGAGCAGCGTCCAGGTGTCG
ACACCTCATTCCCTGGGGATTTTATCAACCTCTGAGCCGCCGAGTACCGG
AAGGTTCCGTAAAGGTTACGATAGGCTTATCTTTGCTAGGATTCTCGAGT
TCCACAGACAGACTAAATCCCCGTTTATGGTTTACCCCTACCCGTATTTT
GGGTTCAAGCCTCAGACGCTCAACTACGCTTTGTTTAACCNAAACGCGGC
GTTTTTGATCCT
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