FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_MOUSE (Katanin p80 WD40-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  107 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            T   L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD     +++      P    P         V  V + P+   +A GS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          

HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 54/200 (27.00%), Postives = 90/200 (45.00%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            LL TG  D  V LW  +      + TGH   V SV  +    +  + S    +RV+D++    + TL    + +  + F P G  +A +G    ++KLWD             R +G     +  S+  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D E
Sbjct:   35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWDLE 219          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_HUMAN (Katanin p80 WD40-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 53/196 (27.04%), Postives = 92/196 (46.94%), Query Frame = 2
Query:  107 TRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            T   L++ GS   ++++W  +  ++ RT  GH   + S+  HP G   AS S D+ ++++D+     +         V  ++F P G  LA A     +VKLWD     +++      P    P         V  V + P+   +A GS D TI  +D+ + + +  +EG   PVRS++++P D   L+S   D+
Sbjct:   73 TPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASA-ADDHTVKLWDLTAGKMMSEF----PGHTGP---------VNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP-DGCCLYSGCQDS 253          

HSP 2 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 54/200 (27.00%), Postives = 90/200 (45.00%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            LL TG  D  V LW  +      + TGH   V SV  +    +  + S    +RV+D++    + TL    + +  + F P G  +A +G    ++KLWD             R +G     +  S+  V  + +SPDG+ +A  + D T+ ++D+T  K +    GH  PV  + + P +  +L S S D  +  +D E
Sbjct:   35 LLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVA-SGSQDTNIKLWDI------------RRKGCVFRYRGHSQA-VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHP-NEYLLASGSSDRTIRFWDLE 219          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_SCHPO (Guanine nucleotide-binding protein subunit beta-like protein OS=Schizosaccharomyces pombe GN=rkp1 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 53/200 (26.50%), Postives = 92/200 (46.00%), Query Frame = 2
Query:  125 LTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSE-VWQMQFDPKGTTLA-VAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            L+ S D+T++LW  +  +      GH   V+SV+  P      S S D  ++++++  N      +   S+ V  ++F P    L  V+ G   +VK+WD  T++L              T       +V +V  SPDG   A G  DGT+ ++D+  +  L+ LE     + +LV+SP   R    A+  + + ++D E
Sbjct:   79 LSASWDKTIRLWDLEKGECTHQFVGHTSDVLSVSISPDNRQVVSGSRDKTIKIWNIIGNCKYTITDGGHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWDLETFSL-------------RTSHYGHTGYVSAVTISPDGSLCASGGRDGTLMLWDLNESTHLYSLEAK-ANINALVFSP--NRYWLCAATGSSIRIFDLE 262          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP46_SCHPO (Pre-mRNA-splicing factor prp46 OS=Schizosaccharomyces pombe GN=prp5 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 62/213 (29.11%), Postives = 85/213 (39.91%), Query Frame = 2
Query:   89 WVPATETRPA--LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAEG 721
            WV   +  P      TG+ D T+K+W      L+ T TGH   V  +A  P      S   D  V+ +D++TN  I       S V+ ++  P    L V  G  A  ++WD  T   +  L             S  K  V S+A      ++  GSMD TI ++D+   K L  L  H   VR+L   P D     S S D   H    EG
Sbjct:  165 WVRCVDVEPGNQWFCTGAGDRTIKIWDLASGVLKLTLTGHIATVRGLAVSPRHPYLFSCGEDKMVKCWDLETNKVIRHYHGHLSGVYALKLHPTLDVL-VTAGRDAVARVWDMRTRQNVHVL-------------SGHKSTVASLAVQEFDPQVVTGSMDSTIRLWDLAAGKTLTTLTHHKKTVRALSLHP-DEFTFASGSSDNIKHWKFPEG 362          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 55/199 (27.64%), Postives = 87/199 (43.72%), Query Frame = 2
Query:   98 ATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            A   +  L+ TGS+D T KLW  +  +   T  GH   ++S+  + +G    + S D    ++DV +   +  L     E+  +QF+   + +A A     S K+WD      +ATL     E             VL V ++  G+ IA  S DGT  VF     + L  LEGH   +  + ++    RVL ++ D T
Sbjct:  184 AFNPQSTLVATGSMDTTAKLWDVESGEEVSTLAGHFAEIISLCFNTTGDRLVTGSFDHTAILWDVPSGRKVHVLSGHRGEISCVQFNWDCSLIATA-SLDKSCKVWDAEGGQCLATLLGHNDE-------------VLDVCFNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKT 368          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_BIOGL (Guanine nucleotide-binding protein subunit beta-2-like 1 OS=Biomphalaria glabrata PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 49/179 (27.37%), Postives = 86/179 (48.04%), Query Frame = 2
Query:   53 ENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT 589
            ++ H +    V + P T+    ++++   D  VK+W   + +L+  + GH   V +V   P G + AS   DS   ++D++    + TL+     +  + F P    L VA G   S+K+WD     ++  L   +PE +  T K+ +    LS+AWS DG+ +  G  D  I V+ V+
Sbjct:  144 DDCHTDWTSCVRFSPNTQN--PIIVSSGWDRLVKVWNLTNCKLKTNHYGHTGYVNTVTVSPDGSLCASGGKDSQAMLWDLNEGKHLYTLDGAGDTINALCFSPNRYWLCVASG--PSIKIWDLEGKVVVDEL---KPEVMGTTSKAPT---CLSLAWSADGQTLFAGYTDKLIRVWQVS 312          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: RCO1_NEUCR (Transcriptional repressor rco-1 OS=Neurospora crassa GN=rco-1 PE=4 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 52/171 (30.41%), Postives = 84/171 (49.12%), Query Frame = 2
Query:  206 LGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVT--RAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            L + SV   P G   A+ + D  +RV+D+ +     T      +++ + F   G T+A +G G  +V+LWD  T    + LSI              +  V +VA SPD + +A GS+D ++ V+D+    A+ L   +GH   V S+ +SP D R L S S D  + M++
Sbjct:  345 LYIRSVCFSPDGKYLATGAEDKLIRVWDIQSRTIRNTFHGHEQDIYSLDFSRDGRTIA-SGSGDRTVRLWDIETGQNTSVLSI--------------EDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLAERLEGPDGHKDSVYSVAFSP-DGRNLVSGSLDKTIKMWE 499          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 60/211 (28.44%), Postives = 100/211 (47.39%), Query Frame = 2
Query:   41 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCL--GVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSE---VWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPV 658
            +++  + HE+ ++++ +     T    + +GS D TV+LW   D++  +  +   +  GV +VA  P     A+ SLD  VRV+D+    +   LE P      V+ + F P G  L V+G    ++K+W+ +    I + S P   G         + FVLSVA +PD + +  GS D  +  +D         L+GH   V S+  SPV
Sbjct:  378 IRNTFHGHEQDIYSLDFSRDGRT----IASGSGDRTVRLW---DIETGQNTSVLSIEDGVTTVAISPDKQFVAAGSLDKSVRVWDMRGYLA-ERLEGPDGHKDSVYSVAFSPDGRNL-VSGSLDKTIKMWELSAPRGIPS-SAPPKGGRCIKTFEGHRDFVLSVALTPDSQWVLSGSKDRGVQFWDPRTGHTQLMLQGHKNSVISVAPSPV 578          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: KTNB1_STRPU (Katanin p80 WD40-containing subunit B1 OS=Strongylocentrotus purpuratus GN=KATNB1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.822e-11
Identity = 54/200 (27.00%), Postives = 90/200 (45.00%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            +++TG  D+ V LW         + +GH   V SV  + S  +  + S    ++++D++    + TL    + +  M F P G  +A +G    +VKLWD             R +G   T K  S + V  + +SPDG+ +   S D TI ++D+T  K     + H   V  + + P +  +L S S D  V  +D E
Sbjct:   31 VMVTGGEDKKVNLWAVGKQNCIISLSGHTSPVDSVKFNSSEELVVAGSQSGTMKIYDLEPAKIVRTLTGHRNSIRCMDFHPFGEFVA-SGSTDTNVKLWDV------------RRKGCIYTYKGHSDQ-VNMIKFSPDGKWLVTASEDTTIKLWDLTMGKLFQEFKNHTGGVTGIEFHP-NEFLLASGSSDRTVQFWDLE 215          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TUP12_SCHPO (Transcriptional repressor tup12 OS=Schizosaccharomyces pombe GN=tup12 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 57/198 (28.79%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 655
            HE+ ++++ +    +T    L++GS D TV LW  +  + ++       GV +V   P G   A+ SLD  +R++   +   +  L      V+ + F P G  L V+G    ++KLW+    + +A  S+ +  G+     +  K F+LSV  SPDG+ I  GS D TI  +          L+GH   V S+  SP
Sbjct:  375 HEQEIYSLDFSKDGKT----LVSGSGDRTVCLWDVEAGE-QKLILHTDDGVTTVMFSPDGQFIAAGSLDKVIRIW-TSSGTLVEQLHGHEESVYSVAFSPDGKYL-VSGSLDNTIKLWELQCVSNVAP-SMYKEGGICKQTFTGHKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQLTLQGHNNSVISVAVSP 564          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: SWD3_SCHPO (Set1 complex component swd3 OS=Schizosaccharomyces pombe GN=swd3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.379e-11
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            HE+SV  V+  P        + T S D T+K+W     +LE T  GH  G+  V         ASAS D  +R++D +   S+  L+   + V  + F+P G TL V+G    +V++W+      +  L    P   +P         ++SV+ S DG   A  S DG   ++DV   + L  L E   +P+ +L ++  + + L  ++ ++ + ++D
Sbjct:   53 HEKSVTCVSVSP----NKRWIATSSSDGTIKIWSALTFRLECTLFGHYRGISQVKWATGSKYLASASDDKTIRIWDFEKRCSVRCLKGHTNYVSSIDFNPLG-TLLVSGSWDETVRIWNLQDGTCLRML----PAHSEP---------IISVSISADGTLCATASYDGMARIWDVLSGQCLKTLVEPINVPLSNLQFTE-NRKYLLVSNLNSQIRLWD 251          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
KTNB1_MOUSE6.262e-1227.04Katanin p80 WD40-containing subunit B1 OS=Mus musc... [more]
KTNB1_HUMAN6.262e-1227.04Katanin p80 WD40-containing subunit B1 OS=Homo sap... [more]
GBLP_SCHPO6.262e-1226.50Guanine nucleotide-binding protein subunit beta-li... [more]
PRP46_SCHPO8.178e-1229.11Pre-mRNA-splicing factor prp46 OS=Schizosaccharomy... [more]
WDR69_DANRE1.395e-1127.64WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
GBLP_BIOGL1.395e-1127.37Guanine nucleotide-binding protein subunit beta-2-... [more]
RCO1_NEUCR1.822e-1130.41Transcriptional repressor rco-1 OS=Neurospora cras... [more]
KTNB1_STRPU1.822e-1127.00Katanin p80 WD40-containing subunit B1 OS=Strongyl... [more]
TUP12_SCHPO2.379e-1128.79Transcriptional repressor tup12 OS=Schizosaccharom... [more]
SWD3_SCHPO2.379e-1127.06Set1 complex component swd3 OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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