FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51B_HUMAN (WD repeat-containing protein 51B OS=Homo sapiens GN=WDR51B PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 56/182 (30.77%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  167 DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            +D  LER   GH   + S+   P+G   A+AS D+F+ +++   +A           V  +QF P G  LA A     +V+LW            IP   G K ++  +    V SV +S DG+ +A  S D +I V+ + R +FL+ L  H   VR   +SP D R++ S S+D  + ++D
Sbjct:    6 EDPVLERYFKGHKAAITSLDLSPNGKQLATASWDTFLMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASA-SRDRTVRLW------------IPDKRG-KFSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSP-DGRLIVSCSEDKTIKIWD 172          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51A_BOVIN (WD repeat-containing protein 51A OS=Bos taurus GN=WDR51A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD  +   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V +L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWSTHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKTSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNALSFHPSGNYLVTASSDST 252          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_HUMAN (Pre-mRNA-processing factor 19 OS=Homo sapiens GN=PRPF19 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQDLVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP19_BOVIN (Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRPF19 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 58/236 (24.58%), Postives = 101/236 (42.80%), Query Frame = 2
Query:   14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLW---DTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            P    K+  + S    H  S+  +  +    +    +LTG  D+ V ++     Q+  T  GH   V SV  HPS  +  SAS D+ +R++ V   + +  + A  S V  +     G  L      S+  + W   D  T  ++           K TD++S      +  + PDG     G+MD  I ++D+     + +  GH  P+ S+ +S  +   L +A+DD+ V ++D
Sbjct:  201 PEELSKYRQVASHVGLHSASIPGILALDLCPSDTNKILTGGADKNVVVFDKSSEQILATLKGHTKKVTSVVFHPSQELVFSASPDATIRIWSVPNASCVQVVRAHESAVTGLSLHATGDYLL----SSSDDQYWAFSDIQTGRVLT----------KVTDETSGCSLTCA-QFHPDGLIFGTGTMDSQIKIWDLKERTNVANFPGHSGPITSIAFSE-NGYYLATAADDSSVKLWD 420          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: NUDF_CRYNE (Nuclear distribution protein PAC1 OS=Cryptococcus neoformans GN=PAC1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 56/175 (32.00%), Postives = 79/175 (45.14%), Query Frame = 2
Query:  188 TNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYD 712
            T   H   V  +A HP+  + ASAS D+ V+++D +      TL+     V  + FDP+G  +A       ++KLWDTA             + L   D S     V SV + PDG  +   S D TI V+ V+    +    GH   VR  V S  D R L SAS+D    ++D
Sbjct:  100 TLASHRAPVTRLAFHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATC-SSDLTLKLWDTAN-------QYTNVKTLHGHDHS-----VSSVRFMPDGETLVSASRDKTIRVWQVSSGYCIKTFSGHAEWVREAVPSE-DGRWLVSASNDQTSRIWD 260          

HSP 2 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 2
Query:  119 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFD-VDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVD 661
            LL + S D TVKLW  +   +ERT  GH   V+ V   P G + A+ S D  ++++D  +   ++ TL      V  ++F P G TL V+     ++++W  ++   I T              S   ++V     S DGR +   S D T  ++D +  +    L GH   V   V++PV+
Sbjct:  119 LLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLKLWDTANQYTNVKTLHGHDHSVSSVRFMPDGETL-VSASRDKTIRVWQVSSGYCIKTF-------------SGHAEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVN 286          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: NLE1_MOUSE (Notchless protein homolog 1 OS=Mus musculus GN=Nle1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 47/157 (29.94%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  113 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 580
            P  L++GS D T+ LW P +D +     TGH   +  V   P   I ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKLA-------------TDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 59/220 (26.82%), Postives = 96/220 (43.64%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLS-VAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAE 718
            H +SV  + W         LL + S D T+K+WR  D  L RT  GH   V ++A      +   A   +   V   D   S+  L+   S  + +    +G    V+G    ++ LW  A             E  KP  + +  + +++ V +SPD R +A  S D +I ++D    K+L  L GH   V  + +S  D R+L S S D+ + ++D +
Sbjct:  245 HTQSVTCLRW-----GGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEATVNAQDLQGSLKELKERASSRYNL-VRGQGPERLVSGSDDFTLFLWSPA-------------EDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWS-ADSRLLVSGSSDSTLKVWDVK 444          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_CHLRE (Guanine nucleotide-binding protein subunit beta-like protein OS=Chlamydomonas reinhardtii GN=GBLP PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 52/175 (29.71%), Postives = 85/175 (48.57%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 586
            H E V  V + P T T P ++++G  D+ VK+W   + +L+    GH   V +V   P G + AS   D    ++D+     + +L+A    +  + F P    L  A    +S+K+WD  + +++  L   RPE    T K +   + +S+AWS DG  +  G  DG I V+ V
Sbjct:  149 HTEWVSCVRFSPMT-TNP-IIVSGGWDKMVKVWNLTNCKLKNNLVGHHGYVNTVTVSPDGSLCASGGKDGIAMLWDLAEGKRLYSLDA-GDVIHCLCFSPNRYWLCAA--TQSSIKIWDLESKSIVDDL---RPE-FNITSKKAQVPYCVSLAWSADGSTLYSGYTDGQIRVWAV 314          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_ARATH (Guanine nucleotide-binding protein subunit beta-like protein OS=Arabidopsis thaliana GN=ARCA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 592
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA  S +  + F P    L  A      +K+WD  + +++  L +      +  D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAA--TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: CIAO1_SCHJA (Probable cytosolic iron-sulfur protein assembly protein OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.059e-11
Identity = 61/212 (28.77%), Postives = 90/212 (42.45%), Query Frame = 2
Query:   20 SQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDD---MQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVF--DVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWD-------TATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEG 619
            S  +   L S+E  H   V  V W P+      L+ T   D++V LW  DD   +Q       H   V SVA HP G +  S S D+ + V+  ++D     A L    S VW+ +F P G  LA +      VKLW        +++W  IATLS                + +  + WSPD + +A    D  + ++ +  A  L H+ G
Sbjct:   94 SAPEMEALVSLEG-HTSEVKCVAWCPSGH----LIATCGRDKSVWLWEFDDEEDVQCVSVLQPHSQDVKSVAWHPHGEVLVSTSYDNKINVYREELDDWTVFAQLSGHDSTVWKAEFSPSGDILA-SCSDDLCVKLWSWEGVCGKSSSWMCIATLS------------GYHTRTIFDLNWSPDSQLLASCGSDNRLCIYKMP-ANGLTHIGG 286          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 52/201 (25.87%), Postives = 94/201 (46.77%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAE 718
            L++ S D+T+KLW     +  +T  GH   V     +P   +  S S D  V++++V T   + TL A    +  + F   G +L V+G      ++WD A+   + TL+    EG  P         V  V +SP+G+ I   ++D T+ ++D +R + L    GH      +   +S    + + S S+D  V++++ +
Sbjct:   96 LVSASDDKTLKLWDVRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVHFHCNG-SLIVSGSYDGLCRIWDAASGQCLRTLA---DEGNPP---------VSFVKFSPNGKYILTATLDSTLKLWDYSRGRCLKTYTGHKNEKYCIFASFSVTGRKWVVSGSEDNMVYIWNLQ 283          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
WD51B_HUMAN4.059e-1130.77WD repeat-containing protein 51B OS=Homo sapiens G... [more]
WD51A_BOVIN4.059e-1127.01WD repeat-containing protein 51A OS=Bos taurus GN=... [more]
PRP19_HUMAN4.059e-1124.58Pre-mRNA-processing factor 19 OS=Homo sapiens GN=P... [more]
PRP19_BOVIN4.059e-1124.58Pre-mRNA-processing factor 19 OS=Bos taurus GN=PRP... [more]
NUDF_CRYNE4.059e-1132.00Nuclear distribution protein PAC1 OS=Cryptococcus ... [more]
NLE1_MOUSE4.059e-1129.94Notchless protein homolog 1 OS=Mus musculus GN=Nle... [more]
GBLP_CHLRE4.059e-1129.71Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_ARATH4.059e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
CIAO1_SCHJA4.059e-1128.77Probable cytosolic iron-sulfur protein assembly pr... [more]
WDR5B_RAT5.301e-1125.87WD repeat-containing protein 5B OS=Rattus norvegic... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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