FC931782

Overview
NameFC931782
Unique NameFC931782
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5307 contig Ccv1_Contig5307:158..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 58/220 (26.36%), Postives = 89/220 (40.45%), Query Frame = 2
Query:  122 LLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP---------RPEG-----------LKPTDKSSSK---------KFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            L +GS+D T+ +W           TGH   V  V   PSG + AS S D  VR++  +         A  + V  + F   G +L V      +VK+W T     + +L+            P+G           +K  DK+S +          FV  V + P G  IA   MD T+ V+D    + L H + H   V +L + P    ++ ++SD T
Sbjct:   34 LASGSMDSTLMIWHMKPQSRAYRFTGHKDAVTCVNFSPSGHLLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSL-VTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDARTHRLLQHYQLHSAAVNALSFHPSGNYLITASSDST 252          

HSP 2 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 55/218 (25.23%), Postives = 93/218 (42.66%), Query Frame = 2
Query:   38 GLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDD 691
            G  +V  AH  +V +V +    ++    L+T S D+TVK+W     +   + T H   V      P G +  SAS D  V+++D  +   I +       V  + F P GT +A AG  + +VK+WD  T  L+    +                 V ++++ P G  +   S D T+ + D+   + L+ L GH  P  ++ +S          SD+
Sbjct:   94 GESTVFRAHTATVRSVHFCSDGQS----LVTASDDKTVKVWSTHRQRFLFSLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDN-TVKVWDARTHRLLQHYQL-------------HSAAVNALSFHPSGNYLITASSDSTLKILDLMEGRLLYTLHGHQGPATTVAFSRTGEYFASGGSDE 293          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: WD51A_HUMAN (WD repeat-containing protein 51A OS=Homo sapiens GN=WDR51A PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 57/211 (27.01%), Postives = 90/211 (42.65%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H+++V  V + P+      LL +GS D+TV++W P+          H   V SV     G    +AS D  V+V+       + +L    + V   +F P G  L V+     +VKLWD ++   + +                   FV  V + P G  IA   MD T+ V+DV   + L H + H   V  L + P    ++ ++SD T
Sbjct:   60 HKDAVTCVNFSPSGH----LLASGSRDKTVRIWVPNVKGESTVFRAHTATVRSVHFCSDGQSFVTASDDKTVKVWATHRQKFLFSLSQHINWVRCAKFSPDGR-LIVSASDDKTVKLWDKSSRECVHSYC-------------EHGGFVTYVDFHPSGTCIAAAGMDNTVKVWDVRTHRLLQHYQLHSAAVNGLSFHPSGNYLITASSDST 252          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PRP46_DEBHA (Pre-mRNA-splicing factor PRP46 OS=Debaryomyces hansenii GN=PRP46 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 60/219 (27.40%), Postives = 95/219 (43.38%), Query Frame = 2
Query:   14 PPSQMKFAGLKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVD-TNAS----IATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSP 655
            P S  ++  L+ +  AH+  V + T  P T       +TGS D T+K+W      L+ T TGH +GV S+A         S S D  V+ +D++ TN+S    I         ++ M   P+   L   GG  + +++WD  +   I  LS  R +             + S+A      +I   SMD TI ++D+ +A     L  H   +RS+   P
Sbjct:  104 PDSDSRWKLLRVMAGAHQGWVRSCTVDPVTNK---WFVTGSSDSTIKIWDLASSNLKATITGHIMGVRSLAVSSRYPYLFSGSEDKTVKCWDLERTNSSSGCQIRNYHGHVGGIYAMALHPE-LDLLFTGGRDSVIRVWDLRSRTEIMVLSGHRSD-------------ITSIASQIGDPQIITSSMDATIRLWDIRKATTQLALTHHSKSIRSMAMHP 305          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PHIP_MOUSE (PH-interacting protein OS=Mus musculus GN=Phip PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H  SV+ VT+    +     + TGS D  VK+W  DD +L  T  GH   +  +A +    + A+ S D  +RV+ + T A +A L+   + +  +QF P     K    +    G+    LWD  T  +        P   K T++      ++  ++S  G  +A GS D  I V  F   + + +  LE H   V S+ +S    R +  + D T
Sbjct:  182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKI-------NPRPTKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: PHIP_HUMAN (PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 58/218 (26.61%), Postives = 94/218 (43.12%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDP-----KGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISV--FDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDT 694
            H  SV+ VT+    +     + TGS D  VK+W  DD +L  T  GH   +  +A +    + A+ S D  +RV+ + T A +A L+   + +  +QF P     K    +    G+    LWD  T  +        P   K T++      ++  ++S  G  +A GS D  I V  F   + + +  LE H   V S+ +S    R +  + D T
Sbjct:  182 HLSSVYCVTF----DRTGRRIFTGSDDCLVKIWATDDGRLLATLRGHAAEISDMAVNYENTMIAAGSCDKMIRVWCLRTCAPLAVLQGHSASITSLQFSPLCSGSKRYLSSTGADGTICFWLWDAGTLKI-------NPRPAKFTERPRPGVQMICSSFSAGGMFLATGSTDHIIRVYFFGSGQPEKISELEFHTDKVDSIQFSNTSNRFVSGSRDGT 388          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: NLE1_BOVIN (Notchless protein homolog 1 OS=Bos taurus GN=NLE1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 46/157 (29.30%), Postives = 75/157 (47.77%), Query Frame = 2
Query:  113 PALLLTGSLDETVKLWRP-DDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 580
            P  L++GS D T+ LW P +D +     TGH   +  V   P   + ASAS D  ++++D  T   +A+L    + V+Q+ +    + L V+G   +++K+WD     L              TD       V +V WSPDG+R+A G  D  + ++
Sbjct:  341 PERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSAD-SRLLVSGSSDSTLKVWDVKAQKL-------------STDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: TAF5L_MOUSE (TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L OS=Mus musculus GN=Taf5l PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 54/175 (30.86%), Postives = 72/175 (41.14%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDV 586
            H   VW V   P +        +GS D T +LW  D     R   GH   V  V  HP+    A+ S D  VR++      S+         V  + F P G  LA A G    +KLWD A+  L   L          TD       + S+A+SPD   IA  SMD ++ V+D+
Sbjct:  383 HAYPVWDVDISPFS----LYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASA-GEDQRLKLWDLASGTLFKELR-------GHTDS------ITSLAFSPDSGLIASASMDNSVRVWDI 539          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_TOBAC (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana tabacum GN=ARCA PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 50/184 (27.17%), Postives = 91/184 (49.46%), Query Frame = 2
Query:   56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 592
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE+  S +  + F P    L  A    +S+K+WD  + +++  L +  + E    ++ ++S K    +  S++WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRLTLAGHTGYVNTPAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLES-GSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKSIVDDLKVDLKQESEMSSEGTASGKNKVIYCTSLSWSADGSTLFSGYTDGLIRVWGIDR 325          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_BRANA (Guanine nucleotide-binding protein subunit beta-like protein OS=Brassica napus GN=GB1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 2
Query:   62 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIPRPEGLKPTDKS---SSKKFVL---SVAWSPDGRRIACGSMDGTISVFDVTR 592
            H + V  V + P   T    +++ S D+TVK+W   + +L  T  GH   V +VA  P G + AS   D  V ++D+     + +LEA  S +  + F P    L  A      +K+WD  +  ++  L +      + +D S   ++K+ V+   S+ WS DG  +  G  DG I V+ + R
Sbjct:  149 HRDWVSCVRFSP--NTLQPTIVSASCDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSVIHALCFTPNRYWLCAA--TEQGIKIWDLESKTVVEDLKVDLKAEAEKSDGSGTAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR 326          
BLAST of FC931782 vs. ExPASy Swiss-Prot
Match: GBLP_NICPL (Guanine nucleotide-binding protein subunit beta-like protein OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 50/184 (27.17%), Postives = 88/184 (47.83%), Query Frame = 2
Query:   56 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTATWNLIATLSIP-RPEGLKPTDKSSSKK----FVLSVAWSPDGRRIACGSMDGTISVFDVTR 592
            ++H + V  V + P    +P ++ +GS D TVK+W   + +L  T  GH   V + A  P G + AS   D  + ++D+     + +LE+  S +  + F P    L  A    +S+K+WD  +  ++  L +  + E     + ++S K    +  S+ WS DG  +  G  DG I V+ + R
Sbjct:  147 DSHSDWVSCVRFSP-NNLQPTIV-SGSWDRTVKIWNLTNCKLRATLAGHTGYVNTTAVSPDGSLCASGGKDGVILLWDLAEGKKLYSLES-GSIIHSLCFSPNRYWLCAA--TESSIKIWDLESKTIVDDLKVDLKQESEMSAEGTASGKNKVIYCTSLGWSADGSTLFSGYTDGLIRVWGIGR 325          
The following BLAST results are available for this feature:
BLAST of FC931782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
WD51A_MOUSE5.301e-1126.36WD repeat-containing protein 51A OS=Mus musculus G... [more]
WD51A_HUMAN5.301e-1127.01WD repeat-containing protein 51A OS=Homo sapiens G... [more]
PRP46_DEBHA5.301e-1127.40Pre-mRNA-splicing factor PRP46 OS=Debaryomyces han... [more]
PHIP_MOUSE5.301e-1126.61PH-interacting protein OS=Mus musculus GN=Phip PE=... [more]
PHIP_HUMAN5.301e-1126.61PH-interacting protein OS=Homo sapiens GN=PHIP PE=... [more]
NLE1_BOVIN5.301e-1129.30Notchless protein homolog 1 OS=Bos taurus GN=NLE1 ... [more]
TAF5L_MOUSE6.923e-1130.86TAF5-like RNA polymerase II p300/CBP-associated fa... [more]
GBLP_TOBAC6.923e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_BRANA6.923e-1128.42Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_NICPL9.042e-1127.17Guanine nucleotide-binding protein subunit beta-li... [more]

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Properties
Property NameValue
Genbank descriptionC34201B06EF PostHarveN Citrus clementina cDNA clone C34201B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931782 ID=FC931782; Name=FC931782; organism=Citrus clementina; type=EST; length=731bp
GGTAGGGTTGTGTCCACCAAGCCAAATGAAATTTGCTGGTCTAAAATCAG
TCGAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCG
ACCGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGT
GAAGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCC
ACTGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCT
GCCTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAA
CGCCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGC
AGTTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCA
TCTGTAAAGCTCTGGGACACAGCCACTTGGAATCTGATTGCCACCCTGTC
AATTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGA
AGTTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGT
GGTTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATT
CCTGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATT
CCCCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTG
CACATGTATGATGCTGAAGGNTAAAGTCTGG
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