FC931783

Overview
NameFC931783
Unique NameFC931783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15393 contig Ccv1_Contig15393:1..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50
Identity = 97/164 (59.15%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+D + H+LGRLAS VAK LLNGQ IVVVRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGA AL RLKV EG+P P DK KR+VVP AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK +++A YE
Sbjct:   12 VVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYE 174          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50
Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+D + H+LGRLAS  AK+LLNGQK+V+VRCE + +SG   R K+KY  +LRK     P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EG+P P DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D +  LE +RK ++   YE
Sbjct:   12 VVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYE 174          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.056e-49
Identity = 100/166 (60.24%), Postives = 122/166 (73.49%), Query Frame = 3
Query:   78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            +  +VIDGKGHLLGRLAS VAK LL+GQKIVVVRCE LNISG   R KLK+  +L      N  RG   H R+PS+I ++A+RGM+PHKT RG AAL+ +KV EG+P P DK KRVVVP ALRV++L   RKY  + RLS EVGWKY+ VV++LE +RK +S  YY
Sbjct:    4 KKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHR-HGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYY 168          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.814e-49
Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            ++IDGK HLLGRLAS VAK+LL G K+VV+R E + ISG F R+KLKY ++LRK    NP RG  FH+RAP +I ++ +RGM+PHKT RG  AL+ L+  EG+P    K K +  P A R  RL+P RK+C VGRLSHEVGW++QDVV++LE +RKVK  AY+E
Sbjct:    8 IIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGA-FHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFE 169          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.878e-48
Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 3
Query:   87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578
            VV+D + H+LGRLAS VAK+LLNGQK+V+VR E + ISG   R K+KY  +LRK     P+ G P H  APS+I ++ +RGM+PHKT RG  AL RLKV EGIPPP DK+KR+VVP AL+VLRL+ G KYC +G+LS EVGW Y D +  LE++RK +S+  YE
Sbjct:   12 VVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHG-PIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYE 173          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.128e-46
Identity = 90/137 (65.69%), Postives = 114/137 (83.21%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRL 494
            V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK    NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+   K+  +GRL
Sbjct:    2 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22
Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 3
Query:  330 MMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575
            M+ HKT RG A+L+ LKV +GIPPP DKKKR+VVP AL+V+RL+P RK+  +GR + EV WKYQ V + LEE+RK K+K +Y
Sbjct:    1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHY 82          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            + VID KG +LGRLAS+VAKQLL+G +K+ ++  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV  G+P      + V +P A   +RL    +Y  +G +S ++G K+
Sbjct:    4 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY----RETRERGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMGSKF 143          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18
Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            + VID  G +LGRLASTVAKQLL+G ++I +V  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV  G+P      + + +  A   +RL    KY  +G +S ++G K+
Sbjct:    1 MTVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY----RETRERGSTEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMGSKF 140          
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518
            + VID KG +LGRLAS+VAKQLL+G +K+ ++  E   ISG       +Y    R+      T  GP+  + P RIL + IRGM+P+K ARG  A+ RLKV  G+P      +   +  A   +RL    KY  +G +S ++G K+
Sbjct:    1 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY----RETRDRGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMGSKF 140          
The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
R13A1_ARATH1.090e-5059.1560S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]
R13A4_ARATH2.429e-5057.3260S ribosomal protein L13a-4 OS=Arabidopsis thalia... [more]
RL13A_DICDI2.056e-4960.2460S ribosomal protein L13a OS=Dictyostelium discoi... [more]
RL13A_CAEEL7.814e-4957.3260S ribosomal protein L13a OS=Caenorhabditis elega... [more]
RL13A_LUPLU3.878e-4857.9360S ribosomal protein L13a OS=Lupinus luteus GN=RP... [more]
RL13A_PIG2.128e-4665.6960S ribosomal protein L13a (Fragment) OS=Sus scrof... [more]
R13AX_HUMAN8.143e-2259.76Putative 60S ribosomal protein L13a-like MGC87657 ... [more]
RL13_METAC2.896e-1939.7350S ribosomal protein L13P OS=Methanosarcina aceti... [more]
RL13_METBF1.437e-1839.7350S ribosomal protein L13P OS=Methanosarcina barke... [more]
RL13_METMA4.182e-1839.0450S ribosomal protein L13P OS=Methanosarcina mazei... [more]

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Properties
Property NameValue
Genbank descriptionC34201B07EF PostHarveN Citrus clementina cDNA clone C34201B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bp
GGGACTTGACACCCACGACAACAACCGCCGACAACATCCATCCCACGGGA
CATTAGATCACCAGGATGTCCTCCTTCGAATCAGTGGTCGTCATCGACGG
CAAAGGACACCTCCTCGGTCGTCTGGCCAGCACTGTCGCCAAGCAGCTGC
TCAACGGTCAGAAGATCGTCGTCGTGAGATGTGAGGCTCTCAACATCTCC
GGCGAGTTCTTCCGCGCGAAGCTCAAGTACCACGCCTACCTTCGCAAGAT
GACTCGTTTCAACCCCACCCGTGGTGGTCCCTTCCACTTCCGCGCTCCTT
CCCGTATCCTCTACAAGGCCATCCGCGGCATGATGCCCCACAAGACCGCC
CGTGGTGCCGCCGCTCTGGAGCGCCTCAAGGTCCTCGAGGGTATTCCCCC
TCCCTGCGACAAGAAGAAGCGTGTCGTTGTTCCCCAGGCTCTCCGTGTCC
TGCGTCTCCGCCCCGGTCGCAAGTACTGCACCGTCGGCCGTCTCAGCCAC
GAGGTTGGCTGGAAGTACCAGGATGTTGTTTCCAGACTCGAGGAGCGCAG
AAAGGTCAAGAGCAAGGCCTACTACGAGCGCAAGAAGGCCGCTCGCCGTG
TCCTTGCCAAGGCCGAGCAGGGAGCGAACGTGGACAGCAAGACCAAGACC
CAGCTTGCTCAGTTTGGCTACTAGATACCTTTAGCGTGGCTGGTTGTTGT
G
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