FC931783
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 199.904 bits (507), Expect = 1.090e-50 Identity = 97/164 (59.15%), Postives = 121/164 (73.78%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+D + H+LGRLAS VAK LLNGQ IVVVRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGA AL RLKV EG+P P DK KR+VVP AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK +++A YE Sbjct: 12 VVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYE 174
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 2.429e-50 Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+D + H+LGRLAS AK+LLNGQK+V+VRCE + +SG R K+KY +LRK P+ G P HFRAPS+I ++ +RGM+PHKT RGAAAL RLKV EG+P P DK KR+V+P AL+VLRL+ G KYC +GRLS EVGW + D + LE +RK ++ YE Sbjct: 12 VVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHG-PIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYE 174
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_DICDI (60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a PE=3 SV=1) HSP 1 Score: 195.667 bits (496), Expect = 2.056e-49 Identity = 100/166 (60.24%), Postives = 122/166 (73.49%), Query Frame = 3 Query: 78 ESVVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 + +VIDGKGHLLGRLAS VAK LL+GQKIVVVRCE LNISG R KLK+ +L N RG H R+PS+I ++A+RGM+PHKT RG AAL+ +KV EG+P P DK KRVVVP ALRV++L RKY + RLS EVGWKY+ VV++LE +RK +S YY Sbjct: 4 KKAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNTNHARGHR-HGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSALRVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYY 168
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_CAEEL (60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2 SV=1) HSP 1 Score: 193.741 bits (491), Expect = 7.814e-49 Identity = 94/164 (57.32%), Postives = 121/164 (73.78%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 ++IDGK HLLGRLAS VAK+LL G K+VV+R E + ISG F R+KLKY ++LRK NP RG FH+RAP +I ++ +RGM+PHKT RG AL+ L+ EG+P K K + P A R RL+P RK+C VGRLSHEVGW++QDVV++LE +RKVK AY+E Sbjct: 8 IIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRKRCNINPARGA-FHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHAPSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFE 169
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1) HSP 1 Score: 191.43 bits (485), Expect = 3.878e-48 Identity = 95/164 (57.93%), Postives = 121/164 (73.78%), Query Frame = 3 Query: 87 VVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYYE 578 VV+D + H+LGRLAS VAK+LLNGQK+V+VR E + ISG R K+KY +LRK P+ G P H APS+I ++ +RGM+PHKT RG AL RLKV EGIPPP DK+KR+VVP AL+VLRL+ G KYC +G+LS EVGW Y D + LE++RK +S+ YE Sbjct: 12 VVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYLRFLRKRMNTKPSHG-PIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYE 173
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13A_PIG (60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2 SV=2) HSP 1 Score: 185.652 bits (470), Expect = 2.128e-46 Identity = 90/137 (65.69%), Postives = 114/137 (83.21%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRL 494 V+V+DG+GHLLGRLA+ VAKQ+L G+K+VVVRCE +NISG F+R KLKY A+LRK NP+RG P+HFRAPSRI ++ +RGM+PHKT RG AAL+RLKV +GIPPP DKKKR+VVP AL+V+RL+ K+ +GRL Sbjct: 2 VLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRG-PYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKLTGKFXYLGRL 137
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: R13AX_HUMAN (Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens PE=5 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 8.143e-22 Identity = 49/82 (59.76%), Postives = 64/82 (78.05%), Query Frame = 3 Query: 330 MMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKYQDVVSRLEERRKVKSKAYY 575 M+ HKT RG A+L+ LKV +GIPPP DKKKR+VVP AL+V+RL+P RK+ +GR + EV WKYQ V + LEE+RK K+K +Y Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVRWKYQAVTATLEEKRKEKAKIHY 82
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METAC (50S ribosomal protein L13P OS=Methanosarcina acetivorans GN=rpl13p PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.896e-19 Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 + VID KG +LGRLAS+VAKQLL+G +K+ ++ E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV G+P + V +P A +RL +Y +G +S ++G K+ Sbjct: 4 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY----RETRERGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA--DMRLLSSSRYVELGEVSQKMGSKF 143
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METBF (50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl13p PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.437e-18 Identity = 58/146 (39.73%), Postives = 82/146 (56.16%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 + VID G +LGRLASTVAKQLL+G ++I +V E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV G+P + + + A +RL KY +G +S ++G K+ Sbjct: 1 MTVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRATTLKEY----RETRERGSTEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA--DMRLLSSSKYIELGEVSQKMGSKF 140
BLAST of FC931783 vs. ExPASy Swiss-Prot
Match: RL13_METMA (50S ribosomal protein L13P OS=Methanosarcina mazei GN=rpl13p PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 4.182e-18 Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 3 Query: 84 VVVIDGKGHLLGRLASTVAKQLLNG-QKIVVVRCEALNISGEFFRAKLKYHAYLRKMTRFNPTRGGPFHFRAPSRILYKAIRGMMPHKTARGAAALERLKVLEGIPPPCDKKKRVVVPQALRVLRLRPGRKYCTVGRLSHEVGWKY 518 + VID KG +LGRLAS+VAKQLL+G +K+ ++ E ISG +Y R+ T GP+ + P RIL + IRGM+P+K ARG A+ RLKV G+P + + A +RL KY +G +S ++G K+ Sbjct: 1 MTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY----RETRDRGATEFGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA--DMRLLSSNKYVELGEVSQKMGSKF 140 The following BLAST results are available for this feature:
BLAST of FC931783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931783 ID=FC931783; Name=FC931783; organism=Citrus clementina; type=EST; length=701bpback to top |