FC931784

Overview
NameFC931784
Unique NameFC931784
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.283e-14
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            I  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G+ VN
Sbjct:   94 INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVN 197          

HSP 2 Score: 21.9422 bits (45), Expect = 1.283e-14
Identity = 9/26 (34.62%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  299 VVKTSIGGNRIIGRLCVGNKNGLLLP 376
            V + ++  + ++G   V N NG+LLP
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLP 73          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.667e-14
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 3
Query:  411 LSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGL 701
            ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +IG+GL
Sbjct:   96 INAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGL 192          

HSP 2 Score: 36.965 bits (84), Expect = 1.667e-14
Identity = 23/76 (30.26%), Postives = 35/76 (46.05%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            R  F  S  VGVF++  +   LV     E        EL      + T++GG   +G L  GN+NG+L+    T++
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEELG--AEPLLTTVGGANTVGSLATGNENGVLVSARATER 76          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 6.168e-14
Identity = 33/99 (33.33%), Postives = 55/99 (55.56%), Query Frame = 3
Query:  414 SALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +ALGN + CN+   +A ++L+R+    I++ LGVE   + I    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +GL  N
Sbjct:  102 TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIAN 200          

HSP 2 Score: 33.4982 bits (75), Expect = 6.168e-14
Identity = 25/76 (32.89%), Postives = 35/76 (46.05%), Query Frame = 2
Query:  167 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I    + G L VGN NG++LP    D+
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDE 78          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.175e-14
Identity = 41/104 (39.42%), Postives = 59/104 (56.73%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +  + +A+ N I   + VAL    L+    +++ADVLGVEV   TIAGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G+ VN
Sbjct:   94 LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVN 197          

HSP 2 Score: 22.3274 bits (46), Expect = 6.175e-14
Identity = 9/26 (34.62%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  299 VVKTSIGGNRIIGRLCVGNKNGLLLP 376
            V + ++  + ++G   V N NG+LLP
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLP 73          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_HYPBU (Translation initiation factor 6 OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eif6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.014e-14
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI-LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +E R +ALGN IA N+  AL    +D+   + I  VLGVE   Q    NI  VGS    +NRGG+VHP  S +++  L+++  V     TVN G   + AGL  N
Sbjct:   95 LEVRQTALGNLIAANNRGALVSPLIDKAILDKIKSVLGVETIYQRHLANIPTVGSMIVVTNRGGVVHPGVSDDEIRILNSVFGVEFTTATVNFGLYFVKAGLVAN 199          

HSP 2 Score: 30.8018 bits (68), Expect = 8.014e-14
Identity = 21/61 (34.43%), Postives = 28/61 (45.90%), Query Frame = 2
Query:  194 VGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLP 376
            +GV+    N   LV    +E      E  L   + V++T I    I G +  GN NGLLLP
Sbjct:   13 IGVYIYANNKIALVPPTLTEKDKKKIEETLG--VEVIETKIADMIINGVMIAGNDNGLLLP 71          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.018e-14
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  405 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIGAGLTVN 710
            E ++A GN I  ND  A+ H D+     E++AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +IG GL +N
Sbjct:   93 EEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLIN 197          

HSP 2 Score: 31.187 bits (69), Expect = 8.018e-14
Identity = 19/72 (26.39%), Postives = 34/72 (47.22%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLL 373
            M   L       +GV++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G ++
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVV 70          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 47/133 (35.34%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  318 VATGLSGGFVLV--TKMGFSCHTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            ++ G S GF+L    +      T      + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++G+GL  N
Sbjct:   60 LSRGNSNGFMLPYGARAEMQRFTDIPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLAN 192          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.423e-13
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 3
Query:  375 HTQPQTKRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            HT      ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   + +GL  N
Sbjct:   86 HTDLNVVVLDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLAN 197          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 6.495e-13
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  399 IEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIGAGLTVN 710
            I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA +  N
Sbjct:  100 IKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIAN 203          

HSP 2 Score: 36.965 bits (84), Expect = 6.495e-13
Identity = 25/81 (30.86%), Postives = 41/81 (50.62%), Query Frame = 2
Query:  158 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELADVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQ 394
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L V NK GLLLP    D+
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDE 79          
BLAST of FC931784 vs. ExPASy Swiss-Prot
Match: IF6_METTH (Translation initiation factor 6 OS=Methanobacterium thermoautotrophicum GN=eif6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 49/150 (32.67%), Postives = 74/150 (49.33%), Query Frame = 3
Query:  300 LLKHQLVATGLSGGFVLVTKMGFSCHTQPQTK-------------RIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 710
            +LK  +  + L+G   +    GF    Q   +             RI ER +A+GN +  ND+ A+A   L  +  ++I DVL V+V   T+AG  +VGS  + +NRG L++P  S E++  +   L V    GTVN G  +IGA    N
Sbjct:   46 VLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAAGVEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIGIIEDTLGVEADVGTVNHGVTLIGACSVAN 195          
The following BLAST results are available for this feature:
BLAST of FC931784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IF6_PYRAE1.283e-1441.35Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_HALLT1.667e-1436.08Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_STAMF6.168e-1433.33Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_PYRAR6.175e-1439.42Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_HYPBU8.014e-1440.00Translation initiation factor 6 OS=Hyperthermus bu... [more]
IF6_METLZ8.018e-1434.29Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_METAC8.366e-1435.34Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_CENSY5.423e-1334.82Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_METJA6.495e-1337.14Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_METTH7.082e-1332.67Translation initiation factor 6 OS=Methanobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionC34201B08EF PostHarveN Citrus clementina cDNA clone C34201B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931784 ID=FC931784; Name=FC931784; organism=Citrus clementina; type=EST; length=712bp
GATCGCAGGTAGTTAGTTACATTTGATTTTATTGATATGGATATTCTGTA
CATGTTCGGTGGCTAACAGAAAAATCGAATTTGTATGTTATTCTTGCAGG
TCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAATT
TGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGTG
TGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTCT
GAGAGCTTCTACAGCACATTTGAGGCGGAGTTAGCAGATGTTATTCCTGT
TGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTTG
GTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGCGTAT
TGAAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATG
TTGCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCA
GATGTTCTTGGAGTAGAAGTTTTTAGGCAGACAATTGCCGGTAATATCCT
TGTTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTC
ATACATCCATTGAAGACTTGGATGAACTCTCTACACTCTTGCAAGTACCT
TTGGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTT
AACTGTGAATGA
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