FC931788 | Citrus Genome Database

Overview


Name	FC931788
Unique Name	FC931788
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	694

Libraries


Library Name	Type
PostHarveN	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10305	contig	Ccv1_Contig10305:9..702.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.363e-44
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VLASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.699e-44
Identity = 96/174 (55.17%), Postives = 114/174 (65.52%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 96/174 (55.17%), Postives = 114/174 (65.52%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDYERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.721e-44
Identity = 97/174 (55.75%), Postives = 114/174 (65.52%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFL+LGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 1.270e-43
Identity = 95/174 (54.60%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG ++F  FDLGGHQ ARR+W                   ERF E+K              VPF+VLGNKID P A SE+ELR+ LG+   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_PICST (Small COPII coat GTPase SAR1 OS=Pichia stipitis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 95/174 (54.60%), Postives = 113/174 (64.94%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M+L DWF  VL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID+P A  E EL+  LGL N TTGK    L + + RP+EV+M S
Sbjct:    1 MWLFDWFQDVLSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELSHVPFLILGNKIDVPTAVGEMELKSALGLYN-TTGKDTGKLPEGS-RPIEVYMVS 172

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.166e-43
Identity = 94/174 (54.02%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   +RF E+K              VPF++LGNKID P A SEEELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 92/174 (52.87%), Postives = 115/174 (66.09%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERF E+K              VPF++LGNKID P A SE+ELR+ LGL   TTGKG+V L    +RP+E+FM S
Sbjct:    1 MWIVNWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGRVQL--EGIRPIELFMCS 171

[Close]

BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_LODEL (Small COPII coat GTPase SAR1 OS=Lodderomyces elongisporus GN=SAR1 PE=3 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 3.694e-43
Identity = 94/174 (54.02%), Postives = 111/174 (63.79%), Query Frame = 1

Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++ DWF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWIFDWFQDILASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADSERFAESKAELESLFKIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPEGQ-RPIEVFMVS 172

The following BLAST results are available for this feature:

BLAST of FC931788 vs. ExPASy Swiss-Prot

BLAST of FC931788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49


Match Name	E-value	Identity	Description
SAR1_ASPCL	4.363e-44	55.75	Small COPII coat GTPase sar1 OS=Aspergillus clavat...	[more]
SAR1_ASPOR	5.699e-44	55.75	Small COPII coat GTPase sar1 OS=Aspergillus oryzae...	[more]
SAR1_ASPFU	5.699e-44	55.17	Small COPII coat GTPase sar1 OS=Aspergillus fumiga...	[more]
SAR1_ASPTN	9.721e-44	55.17	Small COPII coat GTPase sar1 OS=Aspergillus terreu...	[more]
SAR1_ASPNC	9.721e-44	55.75	Small COPII coat GTPase SAR1 OS=Aspergillus niger ...	[more]
SAR1_CHAGB	1.270e-43	54.60	Small COPII coat GTPase SAR1 OS=Chaetomium globosu...	[more]
SAR1_PICST	2.166e-43	54.60	Small COPII coat GTPase SAR1 OS=Pichia stipitis GN...	[more]
SAR1_MAGGR	2.166e-43	54.02	Small COPII coat GTPase SAR1 OS=Magnaporthe grisea...	[more]
SAR1_TRIRE	3.694e-43	52.87	Small COPII coat GTPase sar1 OS=Trichoderma reesei...	[more]
SAR1_LODEL	3.694e-43	54.02	Small COPII coat GTPase SAR1 OS=Lodderomyces elong...	[more]

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Properties


Property Name	Value
Genbank description	C34201B12EF PostHarveN Citrus clementina cDNA clone C34201B12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC931788 ID=FC931788; Name=FC931788; organism=Citrus clementina; type=EST; length=694bp
GGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGCTCATCTTA
GGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCG
TTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCT
AATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGT
GCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAG
GGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAG
AGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAG
TATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTG
CTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATAC
CTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACT
GGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGT
TAGGAAACAAGATTGACATCCCTCATGCTGCTTCTGAGGAAGAGTTGCGT
TACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCT
AGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGCGTAGCA