FC931788

Overview
NameFC931788
Unique NameFC931788
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.301e-43
Identity = 96/174 (55.17%), Postives = 112/174 (64.37%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT +PTSEEL IG  +F  FDLGGHQ ARR+W                   ERF ESK              VPFLVLGNKID P A SE+ELR+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLVLGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.229e-43
Identity = 93/174 (53.45%), Postives = 111/174 (63.79%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M++ DWF  +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK              VPF++LGNKID+P A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADTERFAESKAELESLFRIEELSQVPFVILGNKIDVPTAVGEMELKNALGLYN-TTGKDTGKLPE-GTRPIEVFMVS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_DEBHA (Small COPII coat GTPase SAR1 OS=Debaryomyces hansenii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.075e-42
Identity = 96/174 (55.17%), Postives = 110/174 (63.22%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M+L DWF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG ++F  FDLGGHQ ARR+W                   ERFAESK             +VPFL+LGNKID   A  E EL+  LGL N TTGK    L +   RP+EVFM S
Sbjct:    1 MWLFDWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAADPERFAESKAELESLFKIEELASVPFLILGNKIDASSAVGEMELKSALGLYN-TTGKDTGKLPEGQ-RPIEVFMVS 172          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 96/171 (56.14%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVF 684
            M++L+WF  VLASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEELSIG ++F  FDLGGH+ ARRVW                   ERF ES+              VP LVLGNKID   A SE ELR+ LGL   TTGK KV L +   RPLEVF
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGLMT-TTGKDKVQLVEGQ-RPLEVF 169          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.833e-42
Identity = 96/174 (55.17%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            MFL DWF+ VL+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT +PTSEEL++G I+FKAFDLGGH+ ARR+W                   +RF ESKK            NVPFL+LGNK+DI +  SEE+ R  LGL+  TTGKGK  L  + VRP+EVFM S
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIGN-TSEEKFRASLGLTQ-TTGKGKTTL--NGVRPIEVFMCS 170          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.084e-42
Identity = 94/174 (54.02%), Postives = 113/174 (64.94%), Query Frame = 1
Query:  172 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            M+L++WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEEL+IG  +F  FDLGGHQ ARR+W                   E F ESK              VPFL+LGNKID P A SE+++R+ LGL   TTGKGKV L    +RP+EVFM S
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCS 171          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.966e-42
Identity = 94/177 (53.11%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  175 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFM S
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 94/177 (53.11%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  175 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFM S
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 94/177 (53.11%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  175 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFM S
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCS 179          
BLAST of FC931788 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.098e-42
Identity = 94/177 (53.11%), Postives = 107/177 (60.45%), Query Frame = 1
Query:  175 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPHAASEEELRYHLGLSNFTTGKGKVNLADSNVRPLEVFMRS 693
            F+ DW Y     VL  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT +PTSEEL+I  + F  FDLGGH  ARRVW                   ER  ESK+            NVP L+LGNKID P A SEE LR   GL   TTGKG V+L + N RPLEVFM S
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCS 179          
The following BLAST results are available for this feature:
BLAST of FC931788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_EMENI6.301e-4355.17Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1_CANAL8.229e-4353.45Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_DEBHA1.075e-4255.17Small COPII coat GTPase SAR1 OS=Debaryomyces hanse... [more]
SAR1_PICPG1.833e-4256.14Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1A_DICDI1.833e-4255.17GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_ASPNG4.084e-4254.02Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1B_MOUSE6.966e-4253.11GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_RAT9.098e-4253.11GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG9.098e-4253.11GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_BOVIN9.098e-4253.11GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]

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Properties
Property NameValue
Genbank descriptionC34201B12EF PostHarveN Citrus clementina cDNA clone C34201B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931788 ID=FC931788; Name=FC931788; organism=Citrus clementina; type=EST; length=694bp
GGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGCTCATCTTA
GGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGATCTGATTCG
TTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTTTCGTTTCT
AATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTCTACGGCGT
GCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTTGTTTTTAG
GGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGAAAGATGAG
AGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAAGAGCTTAG
TATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCATCAGATTG
CTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTGTGGTATAC
CTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAGAAAGAACT
GGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTTTCTTGTGT
TAGGAAACAAGATTGACATCCCTCATGCTGCTTCTGAGGAAGAGTTGCGT
TACCACCTTGGCCTATCAAATTTCACCACTGGGAAGGGGAAGGTTAATCT
AGCGGACTCAAATGTCCGTCCACTGGAGGTGTTTATGCGTAGCA
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