FC931790

Overview
NameFC931790
Unique NameFC931790
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_MOUSE (60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_MACFA (60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_HUMAN (60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_BOVIN (60S ribosomal protein L19 OS=Bos taurus GN=RPL19 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.144e-46
Identity = 92/165 (55.76%), Postives = 117/165 (70.91%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M  L  QKRLA+SV+ CGK+K+WLDPNE NEI+NANSRQ IRKL+ DGLIIRKPVT+HSRA  R+   ARR GRH G+GKRKGT +ARMP +                   + KID+H+YH LY   KGN FK+KR L+EHI K KA++AR ++L ++ +A+R+K
Sbjct:    1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL191_ARATH (60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.346e-46
Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKN 542
            MV+L  QKRLAASV+ CGK K+WLDPNE ++IS ANSRQ IRKLV DG IIRKP  +HSR+ AR++  A+  GRH G GKRKGT++AR+P++                     KIDKH+YH++Y   KGN FK+KR L+E I K+KAE+AR++ L ++ +AKRAKN
Sbjct:    1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMYHDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKN 166          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_DROME (60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.413e-46
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAK 539
            M +L  QKRLAASV+ CGK+K+WLDPNE+NEI+N NSRQ IRKL+ DGLII+KPV +HSR   R+  EARR GRH G GKRKGT +ARMP++                   + KID+HLYH+LY   KGN FK+KR L+E+I K KAE+ R ++L ++ +A+R K
Sbjct:    1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSRYRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLYHDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQK 165          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_CAEEL (60S ribosomal protein L19 OS=Caenorhabditis elegans GN=rpl-19 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.681e-46
Identity = 92/166 (55.42%), Postives = 116/166 (69.88%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKN 542
            M NL  QKRLA++V+ CGK ++WLDPNE++EIS ANSRQ+IR+LV+DGLIIRKPVT+HSR  ARE  EARR GRH G GKR+GT +ARMP +                   A K+DKHLYHELY  +KGN FK+K+ L+E+I K K E  R + L ++  A+R KN
Sbjct:    1 MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSRFRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLYHELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQAQARRDKN 166          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_DICDI (60S ribosomal protein L19 OS=Dictyostelium discoideum GN=rpl19 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.481e-42
Identity = 80/166 (48.19%), Postives = 116/166 (69.88%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRALVEHIQKAKAERARDRVLKEEMDAKRAKN 542
            MV+L  QKRLAAS++ CGK ++W+DPNE+ +++ ANSR  +R+L++ G I+RKPV +HSR+ ARE N A+R GRHRG G R GT++AR+PS+                   A KIDKH Y ELY  +KGN FK+KR L+E+I K+K E+ R+++++++  A+R KN
Sbjct:    1 MVSLKLQKRLAASILKCGKGRVWIDPNEIADVAMANSRDNVRRLIATGFIMRKPVVVHSRSRAREHNAAKRLGRHRGAGNRLGTREARLPSKILWIRRIRVLRRLLKKYREAKKIDKHSYRELYLKAKGNVFKNKRTLIEYIVKSKTEKLREKLIQDQAQARRNKN 166          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_PYRHO (50S ribosomal protein L19e OS=Pyrococcus horikoshii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFKHKRAL 458
            M  L  Q+R+AA ++ CG+ ++W+DP +++E+++A +R+ IR+L+ +G+I +KP+   SR  AR  +E ++ GRHRG G RKG K ARM  +                     KID+  Y  LY  +KG  FK+K  L
Sbjct:    1 MNTLKMQRRIAAELLKCGENRVWIDPEKVDEVASAITREDIRRLIKEGVIRKKPIEGQSRYRARIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRRELRKLKEQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of FC931790 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 54/147 (36.73%), Postives = 82/147 (55.78%), Query Frame = 3
Query:   45 MVNLTTQKRLAASVVGCGKRKIWLDPNEMNEISNANSRQTIRKLVSDGLIIRKPVTMHSRASARELNEARRNGRHRGLGKRKGTKDARMPSQXXXXXXXXXXXXXXXXXXAAGKIDKHLYHELYHLSKGNTFK---HKRALVEHIQK 476
            +++L+ Q+RLAASV+ CG+ ++W DP  + +I+ A ++Q IR+L+  G+I RKPV   SRA   +    +R GR RG G RKG K ARMP +                  A G +D+  Y  LY  +KG  F+   H +  VE +++
Sbjct:    3 VMDLSLQRRLAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRKGAKGARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILYRKAKGGEFRSVAHLKIYVEQMKR 149          
The following BLAST results are available for this feature:
BLAST of FC931790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL19_MOUSE1.144e-4655.7660S ribosomal protein L19 OS=Mus musculus GN=Rpl19... [more]
RL19_MACFA1.144e-4655.7660S ribosomal protein L19 OS=Macaca fascicularis G... [more]
RL19_HUMAN1.144e-4655.7660S ribosomal protein L19 OS=Homo sapiens GN=RPL19... [more]
RL19_BOVIN1.144e-4655.7660S ribosomal protein L19 OS=Bos taurus GN=RPL19 P... [more]
RL191_ARATH4.346e-4654.2260S ribosomal protein L19-1 OS=Arabidopsis thalian... [more]
RL19_DROME7.413e-4654.5560S ribosomal protein L19 OS=Drosophila melanogast... [more]
RL19_CAEEL9.681e-4655.4260S ribosomal protein L19 OS=Caenorhabditis elegan... [more]
RL19_DICDI8.481e-4248.1960S ribosomal protein L19 OS=Dictyostelium discoid... [more]
RL19_PYRHO2.172e-2136.9650S ribosomal protein L19e OS=Pyrococcus horikoshi... [more]
RL19_ARCFU2.837e-2136.7350S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201C02EF PostHarveN Citrus clementina cDNA clone C34201C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931790 ID=FC931790; Name=FC931790; organism=Citrus clementina; type=EST; length=673bp
GACGAACATCATCCGCCAACGACCGTCGATACGCCGACATCAAGATGGTC
AACCTTACCACCCAGAAGCGCCTCGCCGCCTCCGTGGTCGGCTGCGGCAA
GCGCAAGATTTGGCTCGACCCCAATGAGATGAACGAGATCTCCAACGCCA
ACTCTCGCCAGACCATCCGCAAGCTCGTCAGCGATGGCCTCATCATCCGC
AAGCCCGTCACCATGCACTCCCGTGCCAGCGCCCGCGAGCTCAACGAGGC
CCGCCGAAACGGCCGTCACCGCGGTCTGGGTAAGCGCAAGGGTACCAAGG
ATGCCCGTATGCCCAGTCAAGTTCTTTGGATGCGCCGCATGCGTGTTCTC
CGCCGTCTGCTCGTCCGCTACCGTGCCGCTGGCAAGATCGACAAGCACCT
CTACCACGAGCTTTACCACCTGAGCAAGGGTAACACCTTCAAGCACAAGC
GTGCCCTCGTTGAGCACATCCAGAAGGCTAAGGCTGAGCGTGCACGCGAC
CGTGTCCTTAAGGAGGAGATGGATGCTAAGCGTGCCAAGAACAAGGCTCT
CCGTGAGCGCCGGTTGGAGCGCAAGGAGGCCAAGCGCGATGCTCTGATCG
GCGAGGAGTAAATCTGATACAAAAATTCAATTACCCTTCCGTTGTTTGAC
GATTTCCTTTGCATTCGGCGGTC
back to top