FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14390 contig Ccv1_Contig14390:12..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 78/184 (42.39%), Postives = 116/184 (63.04%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V WG  +P  +E+I+V PPK+ EVRVK+L   +C TD    +G     +P ++GHE VG+VES G+EV  V+ GD VIP ++ +C+EC  C +   NLC++  +   G++ D T+R + +G+ + H  + ST++EY V+D + V K+D    P  A  + C F+TGYGAA K AKV
Sbjct:    6 KVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGTMVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDLTGRGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKV 189          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_MYXGL (Alcohol dehydrogenase class-3 OS=Myxine glutinosa PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.188e-42
Identity = 89/189 (47.09%), Postives = 114/189 (60.32%), Query Frame = 3
Query:   75 NSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + Q I CKA V W   +PL +EEI+V PPK+ EVR+K+L  +VCHTD     G  P   +P VLGHEG G+VES G+ V + K GD VIP YI +C EC+ C +  TNLC K  +    G+M D TSR++ RG+ LYH    ST+SEY V+    + +V P   P     L C  +TGYGA    AKVE
Sbjct:    4 DGQVIHCKAAVAWEAKKPLSLEEIEVAPPKAHEVRMKVLATAVCHTDAYTLSGVDPEGSFPVVLGHEGAGIVESVGEGVTKFKPGDSVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGMMPDGTSRLTCRGKSLYHFMGASTFSEYAVVADISLCRVAPEAPPDRVCLLGCGVSTGYGAPLNTAKVE 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH7_MOUSE (Alcohol dehydrogenase class 4 mu/sigma chain OS=Mus musculus GN=Adh7 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.188e-42
Identity = 80/184 (43.48%), Postives = 117/184 (63.59%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V WG+ +P  +EEI+V PPK+ EVRVK+L   +C TD    +G     +P ++GHE VGVVES G+ V  V+ GD VIP ++ +C+EC  C +   NLC++  +   G++ D T+R + +G+ + H  + ST++EY V+D + V KVD +  P  A  + C F+TGYGAA K AKV
Sbjct:    6 KVIKCKAAVLWGVNQPFSIEEIEVAPPKAKEVRVKILATGICRTDDHIIKGSMVSKFPVIVGHEAVGVVESVGEGVTTVRPGDKVIPLFLPQCRECNACLNPEGNLCIRSDLTGCGVLADGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKVDGAAPPEKACLIGCGFSTGYGAAVKTAKV 189          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_HUMAN (Alcohol dehydrogenase class-3 OS=Homo sapiens GN=ADH5 PE=1 SV=4)

HSP 1 Score: 171.014 bits (432), Expect = 5.469e-42
Identity = 86/188 (45.74%), Postives = 115/188 (61.17%), Query Frame = 3
Query:   78 SQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            ++ I CKA V W  G+PL +EEI+V PPK+ EVR+K++  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K  +    GLM D TSR + +G+ + H    ST+SEY V+    V K+DP         L C  +TGYGAA   AK+E
Sbjct:    3 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_MALDO (Alcohol dehydrogenase OS=Malus domestica GN=ADH PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.329e-42
Identity = 86/195 (44.10%), Postives = 124/195 (63.59%), Query Frame = 3
Query:   69 MSNS--QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            MSN+  Q I C+A V W  G+PL +EE++V PP++ EVR+K+L+ S+CHTD+   E     PL+PR+ GHE  G+VES G+ V ++K GD V+P + GECK+C +C SE +N+C    I  + G+ML D  SR S++G+ +YH    ST+SEY V+    + K++PS        LSC  +TG GA    AK +K
Sbjct:    1 MSNTAGQVIRCRAAVAWEAGKPLVIEEVEVAPPQANEVRIKILFTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKDCAHCKSEESNMCDLLRINTDRGVMLSDGKSRFSIKGKPIYHFVGTSTFSEYTVVHVGCLAKINPSAPLDKVCLLSCGISTGLGATLNVAKPKK 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHH_GADMO (Alcohol dehydrogenase class-3 chain H OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.329e-42
Identity = 85/187 (45.45%), Postives = 114/187 (60.96%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            Q I CKA V W  G+PL +EE++V PP++ EVR+K++   VCHTD     G  P   +P +LGHEG G+VES G+ V + K GD VIP Y+ +C EC+ C +  TNLC K  +    GLM D+TSR + +G++L+H    ST+SEY V+    +  VDP         L C  +TGYGAA   AKVE
Sbjct:    5 QVIKCKAAVAWEAGKPLSLEEVEVAPPRAGEVRIKVVATGVCHTDAYTLSGSDPEGAFPVILGHEGAGLVESVGEGVTKFKAGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGRGLMPDNTSRFTCKGKQLFHFMGTSTFSEYTVVADISLANVDPKAPLDKVCLLGCGISTGYGAALNTAKVE 191          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSI (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 85/191 (44.50%), Postives = 115/191 (60.21%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA--LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +  Q ITCKA V W   +P+ +E++QV PP++ EVRVK+L+ ++CHTD     G  P  L+P +LGHE  G+VES G+ V EV+ GD VIP Y  EC+EC+ C S  TNLC K   A  +  +M D  SR S+ G+ +YH    ST+S+Y V+    V K++P         L C  +TG GA W  AKVE
Sbjct:    5 TQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVE 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_HORSE (Alcohol dehydrogenase class-3 OS=Equus caballus GN=ADH5 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 85/189 (44.97%), Postives = 115/189 (60.85%), Query Frame = 3
Query:   75 NSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +++ I CKA V W  G+P+ +EE++V PPK+ EVR+K++  +VCHTD     G  P   +P +LGHEG G+VES G+ V ++K GD VIP YI +C EC+ C +  TNLC K       GLM D TSR + +G+ + H    ST+SEY V+    V K+DP         L C  +TGYGAA   AKVE
Sbjct:    2 SAEVIKCKAAVAWEAGKPVSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPQTNLCQKIRTTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGVSTGYGAAVNTAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_ARATH (Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.078e-41
Identity = 88/191 (46.07%), Postives = 116/191 (60.73%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +  Q ITCKA V +   +PL +E++QV PP++ EVR+K+LY ++CHTD     G  P  L+P +LGHE  G+VES G+ V EV+ GD VIP Y  EC+EC+ C S  TNLC K   A   G+M+ D  SR SV G+ +YH    ST+S+Y V+    V K+DP+        L C   TG GA W  AKVE
Sbjct:    3 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVE 193          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_ORYSJ (Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.714e-41
Identity = 85/191 (44.50%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA--LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +  Q ITCKA V W    P+ +E++QV PP++ EVRVK+L+ ++CHTD     G  P  L+P +LGHE  G+VES G+ V EV+ GD VIP Y  EC+EC+ C S  TNLC K   A  +  +M D  SR S+ G+ +YH    ST+S+Y V+    V K++P         L C  +TG GA W  AKVE
Sbjct:    5 TQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVSTGLGAVWNTAKVE 195          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH7_RAT3.206e-4242.39Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADHX_MYXGL4.188e-4247.09Alcohol dehydrogenase class-3 OS=Myxine glutinosa ... [more]
ADH7_MOUSE4.188e-4243.48Alcohol dehydrogenase class 4 mu/sigma chain OS=Mu... [more]
ADHX_HUMAN5.469e-4245.74Alcohol dehydrogenase class-3 OS=Homo sapiens GN=A... [more]
ADH_MALDO9.329e-4244.10Alcohol dehydrogenase OS=Malus domestica GN=ADH PE... [more]
ADHH_GADMO9.329e-4245.45Alcohol dehydrogenase class-3 chain H OS=Gadus mor... [more]
ADHX_ORYSI2.078e-4144.50Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]
ADHX_HORSE2.078e-4144.97Alcohol dehydrogenase class-3 OS=Equus caballus GN... [more]
ADHX_ARATH2.078e-4146.07Alcohol dehydrogenase class-3 OS=Arabidopsis thali... [more]
ADHX_ORYSJ2.714e-4144.50Alcohol dehydrogenase class-3 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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