FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1E_HORSE (Alcohol dehydrogenase E chain OS=Equus caballus PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.105e-34
Identity = 73/185 (39.46%), Postives = 105/185 (56.76%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W   +P  +EE++V PPK+ EVR+KM+   +C +D     G      P + GHE  G+VES G+ V  V+ GD VIP +  +C +C  C     N CLK  +++  G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +        + C F+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.443e-34
Identity = 78/185 (42.16%), Postives = 104/185 (56.22%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFP-APLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W  G PL +EEI V PPK  EVRVKM+ A +C TDI   +    AP  P ++GHEG G+VES G+ V  VK GD VI   + +C EC  C +   N+C +  ++   L  +  SR++ +G+  Y   +  T+SEY+VI    V KVD       A  + C F TG+GAA   AKV
Sbjct:    6 KVIRCKAAVLWKPGAPLTMEEIDVAPPKGKEVRVKMVAAGICGTDIKSLDNKKLAPFCPIIMGHEGTGIVESVGEGVSTVKTGDKVIILCLPQCGECNTCLNSKNNICKEVRLSGTHLTSEGNSRITCKGKTTYQYITTGTFSEYIVIKEISVAKVDEDALLEKACIIGCGFATGFGAAINSAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_GADCA (Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.461e-34
Identity = 76/187 (40.64%), Postives = 108/187 (57.75%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDIL-CSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLK-YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W   +PL +EEI+V+ P + E+R+K++   VCHTD+    EG     +P VLGHEG G+VES G  V E + G+ VIP +I +C EC  C S  TN C+K +      +M    +R + +G+K+      ST+S+Y V++   V K+DPS        L C  +TG+GAA   AKVE
Sbjct:    5 KVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVE 191          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.351e-34
Identity = 73/188 (38.83%), Postives = 107/188 (56.91%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLY-PRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + I CKA V W  G PL +EEI+V PPK+ EVR+KM+   VC TDI   +      + P ++GHEGVG+VES G+ V  V+ GD VI   I +C EC+ C +   N+C +  ++   L  + TSR++ +G+ ++   +  ++SEY V+    V K+D          + C F TGYGAA   AKV
Sbjct:    3 TQGKVIRCKATVLWKPGAPLAIEEIEVAPPKAKEVRIKMVATGVCGTDIKHLDTQELSKFCPMIMGHEGVGIVESVGEGVSSVRTGDKVILLCIPQCGECKTCLNSKNNICTEIRLSKTHLASEGTSRITCKGKLVHQYIALGSFSEYTVLKEISVAKIDEGAPLEKVCIIGCGFATGYGAAINSAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_GEOAT (Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH1 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.553e-33
Identity = 68/187 (36.36%), Postives = 105/187 (56.15%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++D TSR + +G+ ++H    +T+SEY V+    V K+D +        + C F+TGYG+A K  KV +
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVAR 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 68/187 (36.36%), Postives = 105/187 (56.15%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++D TSR + +G+ ++H    +T+SEY V+    V K+D +        + C F+TGYG+A K  KV +
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVVPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCTHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDAASPLEKVCLIGCGFSTGYGSAVKVGKVAR 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.641e-33
Identity = 68/187 (36.36%), Postives = 105/187 (56.15%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I C+A V W   +P  +EE++V PPK+ EVR+K++   +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP ++ +C +C  C    +NLC    +    G ++D TSR + +G+ ++H    +T+SEY V+    V K+D +        + C F+TGYG+A K  KV +
Sbjct:    6 KVIKCRAAVLWEKNKPFSIEEVEVAPPKAYEVRIKIVATGICRSDDHVVNGSIITPLPAILGHEAGGIVESIGEGVTTVKPGDKVIPLFVPQCGKCRACKHPESNLCKHGDLGRAQGTLMDGTSRFTCKGKPIHHFLGVTTFSEYTVVSEISVTKIDATSPLEKVCLIGCGFSTGYGSAVKVGKVAR 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHI_RHOS4 (Alcohol dehydrogenase class-3 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=adhI PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.673e-31
Identity = 76/183 (41.53%), Postives = 99/183 (54.10%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V    G+PL++ E+ +E PK+ EV V++    +CHTD     G  P  ++P +LGHEG GVV   G  V  VK GD VIP Y  EC++C +C S+ TNLC         GLM D TSR S + G  + H   CST+S Y V+    V KV P        ++ C  TTG GA    AKVE
Sbjct:    4 RAAVAVEAGKPLEIMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGMFPAILGHEGAGVVVEVGPGVTSVKPGDHVIPLYTPECRQCPSCLSQKTNLCTAIRGTQGQGLMPDGTSRFSMLDGTPILHYMGCSTFSNYTVLPEIAVAKVRPDAPFDKICYIGCGVTTGIGAVINTAKVE 186          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH_PARDE (S-(hydroxymethyl)glutathione dehydrogenase OS=Paracoccus denitrificans GN=flhA PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.816e-30
Identity = 76/183 (41.53%), Postives = 98/183 (53.55%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMS-VRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V    G+PL+V E+ +E PK+ EV V++    +CHTD     G  P  L+P +LGHEG GVV   G  V  VK G+ VIP Y  EC++C +C S  TNLC         GLM D TSR S + G  ++H   CST+S Y V+    V KV          ++ C  TTG GA    AKVE
Sbjct:    4 RAAVALEAGKPLEVMEVNLEGPKAGEVMVEIKATGICHTDEFTLSGADPEGLFPSILGHEGAGVVVEVGPGVTSVKPGNHVIPLYTPECRQCASCLSGKTNLCTAIRATQGQGLMPDGTSRFSMLDGTPIFHYMGCSTFSNYTVLPEIAVAKVREDAPFDKICYIGCGVTTGIGAVINTAKVE 186          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHB_MYCTU (Alcohol dehydrogenase B OS=Mycobacterium tuberculosis GN=adhB PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            K  + W   +P  VEEI++  P+  EV+++M  A +C +D  L +   P   +P + GHEG G+V   G  V +   GD V+  +I  C +C +C + M NLC L   +     + D + R+  RGQ +Y +    T+S YMV+  + VVK+DPS+    A  + C  TTGYG+A + A V
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADV 184          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH1E_HORSE1.105e-3439.46Alcohol dehydrogenase E chain OS=Equus caballus PE... [more]
ADH6_PERMA1.443e-3442.16Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH1_GADCA2.461e-3440.64Alcohol dehydrogenase 1 OS=Gadus callarias PE=1 SV... [more]
ADH6_RAT9.351e-3438.83Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH1_GEOAT3.553e-3336.36Alcohol dehydrogenase 1 OS=Geomys attwateri GN=ADH... [more]
ADH1_GEOKN4.641e-3336.36Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD... [more]
ADH1_GEOBU4.641e-3336.36Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH... [more]
ADHI_RHOS45.673e-3141.53Alcohol dehydrogenase class-3 OS=Rhodobacter sphae... [more]
FADH_PARDE2.816e-3041.53S-(hydroxymethyl)glutathione dehydrogenase OS=Para... [more]
ADHB_MYCTU3.221e-2635.36Alcohol dehydrogenase B OS=Mycobacterium tuberculo... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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