FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHB_MYCBO (Alcohol dehydrogenase B OS=Mycobacterium bovis GN=adhB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.221e-26
Identity = 64/181 (35.36%), Postives = 98/181 (54.14%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            K  + W   +P  VEEI++  P+  EV+++M  A +C +D  L +   P   +P + GHEG G+V   G  V +   GD V+  +I  C +C +C + M NLC L   +     + D + R+  RGQ +Y +    T+S YMV+  + VVK+DPS+    A  + C  TTGYG+A + A V
Sbjct:    4 KGALIWEFNQPWSVEEIEIGDPRKDEVKIQMEAAGMCRSDHHLVTGDIPMAGFPVLGGHEGAGIVTEVGPGVDDFAPGDHVVLAFIPSCGKCPSCQAGMRNLCDLGAGLLAGESVTDGSFRIQARGQNVYPMTLLGTFSPYMVVHRSSVVKIDPSVPFEVACLVGCGVTTGYGSAVRTADV 184          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH_AMYME (NAD/mycothiol-dependent formaldehyde dehydrogenase OS=Amycolatopsis methanolica PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 53/184 (28.80%), Postives = 85/184 (46.20%), Query Frame = 3
Query:   90 TCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            T + V+    G P+++ +I +  P  +EV   +   +VCHTD+   EG     +P +LGHE  G VES G+ V  V+ GD V+  +   C +C  C       C            ++T +M++  G +L        +++  ++ A    KVDP+ DP+ A  L C    G GAA     V +
Sbjct:    3 TVRGVIARSKGAPVELTDIVIPDPGPSEVTALIATCAVCHTDLTYREGGINDEFPFLLGHEAAGTVESVGEGVDSVQPGDYVVLNWRAVCGQCRACKRGRPQYCFS--------TFNATQKMTLTDGTELTPALGIGAFADKTLVHAGQCTKVDPAADPAVAGLLGCGVMAGLGAAVNTGAVSR 178          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_ZEALU (Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurians GN=ADH1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 48/121 (39.67%), Postives = 69/121 (57.02%), Query Frame = 3
Query:  282 VVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            ++ES G+ V +V  GD V+P + GECKEC +C S  +N+C    I  + G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P         LSC  +TG GA+   AK  K
Sbjct:    1 IIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGISTGLGASINVAKPPK 121          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH2_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adh PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 59/175 (33.71%), Postives = 83/175 (47.43%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            KA V     + L+++E++    +  EV VK+    VCHTD+  + G +P  P  P + GHEGVG+V      VK +K GD V IP     C ECE C +    LC   P  LNG         SV G           ++EY    A+YV K+  ++DP + + + C   T Y A
Sbjct:    2 KAAVVNEFKKALEIKEVERPKLEEGEVLVKIEACGVCHTDLHAAHGDWPIKPKLPLIPGHEGVGIVVEVAKGVKSIKVGDRVGIPWLYSACGECEYCLTGQETLC---PHQLNG-------GYSVDG----------GYAEYCKAPADYVAKIPDNLDPVEVAPILCAGVTTYKA 156          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 44/141 (31.21%), Postives = 72/141 (51.06%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSC 587
            EVRVK+LY  +CH+D+ C +  + + +YP V GHE +G V   G++V +   GD V +   +  C+ CE+C  +  N C K     NG+  D T              +   +S+++V+D  Y VK+  ++    A+ L C
Sbjct:   40 EVRVKVLYCGICHSDLHCLKNEWHSSIYPLVPGHEIIGEVSEIGNKVSKFNLGDKVGVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGT-------------INYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLC 167          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 57/175 (32.57%), Postives = 80/175 (45.71%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            KA V     EPLK++E++       EV V++    VCHTD+  + G +P  P  P + GHEGVG+VE  G  V  +K GD V IP     C  C+ C S    LC     A  G  +D                    ++EY    A+YVVK+  ++   +A+ + C   T Y A
Sbjct:    2 KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNA--GYSVD------------------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA 156          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: XYLB_PSEPU (Aryl-alcohol dehydrogenase OS=Pseudomonas putida GN=xylB PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 51/177 (28.81%), Postives = 80/177 (45.20%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILC-SEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHI----FSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            KA +      P  +E + +  P   +V V+++   +CHTD++C  + +P PL P V GHEG GVVE  G  VK+V+ GD V+ T+   C  C+ C S     C       N +    T   ++   +   +    F  S+++ Y +      VKV   +       L C   TG G+
Sbjct:    4 KAAIVRQKNGPFLLEHVALNEPAEDQVLVRLVATGLCHTDLVCRDQHYPVPL-PMVFGHEGAGVVERVGSAVKKVQPGDHVVLTFY-TCGSCDACLSGDPTSCAN-SFGPNFMGRSVTGECTIHDHQGAEVGASFFGQSSFATYALSYERNTVKVTKDVPLELLGPLGCGIQTGAGS 177          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CAD8C_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8C OS=Oryza sativa subsp. japonica GN=CAD8C PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 46/150 (30.67%), Postives = 73/150 (48.67%), Query Frame = 3
Query:  162 KSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            K  +V +K+LY  +CHTD+ +    +   +YP V GHE VGVV   G  V + K GD V +  ++  C+ CE C +   N C K     NG+  D     + +G           +S+ +V++ +YV++V   +    A+ L C   T Y
Sbjct:  106 KDDDVTIKVLYCGICHTDLHIVKNDWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVASCRGCECCGNGYENYCAKMVTTCNGVDHDHGGGAATQG----------GFSDAIVVNEHYVLRVPAGLPLDSAAPLLCAGVTVY 245          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 56/175 (32.00%), Postives = 81/175 (46.29%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            KA V     +PL+V+E++       EV V++    VCHTD+  + G +P  P  P + GHEGVGV+E  G  V  +K GD V IP     C  C+ C S    LC +   A  G  +D                    ++EY    A+YVVK+  ++   +A+ + C   T Y A
Sbjct:    2 KAAVVEQFKKPLQVKEVEKPKISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNA--GYSVD------------------GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA 156          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 48/166 (28.92%), Postives = 75/166 (45.18%), Query Frame = 3
Query:  114 GLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            G+  P K     V+   S +V +++ +  VC+ D+  +       +YP V GHE  GVV   G +VK  K GD V + TY+  C++CENC S + N C ++    NG+  D T              +   +S ++V+   Y  K+        A+ L C   T Y
Sbjct:   20 GILSPYKFNRRAVQ---SDDVSLRITHCGVCYADVAWTRNILNNSMYPLVPGHEIAGVVTEVGADVKSFKVGDHVGVGTYVNSCRDCENCNSSLENYCSQHVFTFNGVDTDGT-------------VTKGGYSTHIVVHERYCFKIPDGYPLEKAAPLLCAGITVY 169          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADHB_MYCBO3.221e-2635.36Alcohol dehydrogenase B OS=Mycobacterium bovis GN=... [more]
FADH_AMYME3.229e-1828.80NAD/mycothiol-dependent formaldehyde dehydrogenase... [more]
ADH1_ZEALU5.508e-1839.67Alcohol dehydrogenase 1 (Fragment) OS=Zea luxurian... [more]
ADH2_BACST2.829e-1433.71Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
CADH6_ARATH3.694e-1431.21Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
ADH3_BACST1.404e-1332.57Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
XYLB_PSEPU4.085e-1328.81Aryl-alcohol dehydrogenase OS=Pseudomonas putida G... [more]
CAD8C_ORYSJ4.085e-1330.67Probable cinnamyl alcohol dehydrogenase 8C OS=Oryz... [more]
ADH1_BACST4.085e-1332.00Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
CADH1_ORYSJ5.335e-1328.92Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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