FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAEQ (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=adh PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 52/165 (31.52%), Postives = 72/165 (43.64%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLC---LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +EE ++   K  E  VK  Y  VCHTD+         +    LGHEG+G V    D V  +K GD V I      C  CE CT+    LC   L     ++G M                       +E +++DANY VKV  ++DP+ AS ++C   T Y A
Sbjct:   12 VSIEEKRLRELKPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGRVIEVADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVDGAM-----------------------AEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 48/166 (28.92%), Postives = 77/166 (46.39%), Query Frame = 3
Query:  114 GLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            G+  P K    +V+   S +V +++ +  VC+ D++ +   F   +YP V GHE  GVV   G +VK  K GD V +  Y+  C++CENC S + N C K  +  N +  D T              +   +S ++++   Y  K+      S A+ L C   T Y
Sbjct:   20 GILSPYKFNRREVQ---SEDVSLRITHCGVCYADVIWTRNMFNDSIYPLVPGHEIAGVVTEVGADVKGFKVGDHVGVGVYVNSCQDCENCNSSLENHCSKCVVTYNSVDSDGT-------------VTKGGYSSHILVHQRYCFKIPADYPLSKAAPLLCAGITVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH4_KLULA (Alcohol dehydrogenase 4, mitochondrial OS=Kluyveromyces lactis GN=ADH4 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 57/200 (28.50%), Postives = 95/200 (47.50%), Query Frame = 3
Query:   27 SLKFEAAKSTAILTMSNSQAI--TCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPL-YPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            +L  +A+ S + L +++S AI  T K V+ +  G  L+ +++ V  PK+ E+ + + Y+ VCHTD+   +G +P P+  P V GHEG G+V + G+ VK  + GD   I    G C  CE C     + CL+    L+G   D                   ++ +Y   DA    ++    D ++ + + C   T Y A
Sbjct:   10 ALANKASVSRSFLRLNSSFAIPETQKGVIFYENGGKLEYKDLPVPKPKANEILINVKYSGVCHTDLHAWKGDWPLPVKLPLVGGHEGAGIVVAKGENVKNFEIGDYAGIKWLNGSCMSCELCEQGYESNCLQ--ADLSGYTHD------------------GSFQQYATADAVQAAQIPKGTDLAEIAPILCAGVTVYKA 189          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 43/147 (29.25%), Postives = 71/147 (48.30%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V  K+LY  +CH+D+ +    +    YP V GHE VG V   G +V++ K GD V +   +G C+ CENCT  + N C K  +       D ++             +   +S+ MV D +++V++  ++    A+ L C   T Y
Sbjct:   37 DVTFKVLYCGICHSDLHMVKNEWGFSTYPLVPGHEIVGEVTEVGSKVQKFKVGDRVGVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGST-------------TYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGITTY 170          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH2_ARATH (Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis thaliana GN=CAD2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 46/149 (30.87%), Postives = 70/149 (46.98%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSE---GFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+L+  VCH+D+   +   GF    YP + GHE VG+    G  V + KEGD V +   IG C+ CE+C  ++ N C K     N    D TSR            +   +S+ +V+D  +V+ +   +     + L C   T Y
Sbjct:   33 DVTVKILFCGVCHSDLHTIKNHWGFSR--YPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTSR------------NQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVY 167          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CAD8D_ORYSJ (Probable cinnamyl alcohol dehydrogenase 8D OS=Oryza sativa subsp. japonica GN=CAD8D PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 46/147 (31.29%), Postives = 69/147 (46.94%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V +K+LY  +CHTD+ +    +   +YP V GHE VGVV   G  V + K GD V +  ++  C+ C++C     N C    I  NG      +                 +S+ MV+  +YVV+V  S+ P  A+ L C   T Y
Sbjct:   34 DVTIKVLYCGICHTDLHIIKNEWGNAMYPVVPGHEIVGVVTGVGAGVTKFKAGDTVGVGYFVDSCRACDSCGKGYENYCPTMVITSNGTDYGGATTQ-------------GGFSDVMVVRQDYVVRVPASLPPDGAAPLLCAGVTVY 167          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_ZYMMO (Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=adhA PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 9.099e-13
Identity = 48/162 (29.63%), Postives = 74/162 (45.68%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGD-IVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            ++V++ ++ P K  E  ++M Y  VCHTD+    G       R+ GHEG+G+V+  G+ V  +K GD   +  +   C  CE C S    LC     A  G  +D                     +E  ++ A+Y VKV   +DP+ AS ++C   T Y A
Sbjct:   12 IEVKDTKLRPLKYGEALLEMEYCGVCHTDLHVKNGDFGDETGRITGHEGIGIVKQVGEGVTSLKVGDRASVAWFFKGCGHCEYCVSGNETLCRNVENA--GYTVD------------------GAMAEECIVVADYSVKVPDGLDPAVASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH2_ORYSJ (Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa subsp. japonica GN=CAD2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 47/147 (31.97%), Postives = 68/147 (46.26%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            +V VK+LY  +CHTDI  ++    A  YP V GHE VG V   G EV +   GD+V +   +G C+EC  C + +   C K   + N +  D                    ++  MV+D  +VVK+   + P  A+ L C   T Y
Sbjct:   36 DVVVKVLYCGICHTDIHQAKNHLGASKYPMVPGHEVVGEVVEVGPEVTKYSAGDVVGVGVIVGCCRECHPCKANVEQYCNKRIWSYNDVYTDGRPTQ-------------GGFASAMVVDQKFVVKIPAGLAPEQAAPLLCAGLTVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAES (Alcohol dehydrogenase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=adh PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 51/165 (30.91%), Postives = 72/165 (43.64%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLC---LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +EE ++   +  E  VK  Y  VCHTD+         +    LGHEG+G V    D V  +K GD V I      C  CE CT+    LC   L     ++G M                       +E +++DANY VKV  ++DP+ AS ++C   T Y A
Sbjct:   12 VSIEEKRLRELRPGEALVKTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGRVIKIADNVDSLKVGDRVSIAWMYAACGNCEYCTTGRETLCRDVLNAGYTVDGAM-----------------------AEEVIVDANYAVKVPENLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKV 545
            +V +++LY  +CHTD+ +    F   +YP V GHE +G+V   G +V++ K GD V +  ++  C+ C+NC   + N C K+ +      +D T+             +   +S+ MV+D ++V ++
Sbjct:   40 DVALEVLYCGICHTDLHMAKNDFGNSIYPYVPGHEVIGIVAEVGSKVEKYKVGDKVGVGYFVESCRSCQNCIDNLENYCPKHILTQGDKHIDGTT-------------TYGGYSDSMVVDEHFVTRI 153          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH_STAEQ5.335e-1331.52Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
CADH4_ORYSJ6.967e-1328.92Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
ADH4_KLULA6.967e-1328.50Alcohol dehydrogenase 4, mitochondrial OS=Kluyvero... [more]
MTDH_FRAAN9.099e-1329.25Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH2_ARATH9.099e-1330.87Cinnamyl alcohol dehydrogenase 2 OS=Arabidopsis th... [more]
CAD8D_ORYSJ9.099e-1331.29Probable cinnamyl alcohol dehydrogenase 8D OS=Oryz... [more]
ADH1_ZYMMO9.099e-1329.63Alcohol dehydrogenase 1 OS=Zymomonas mobilis GN=ad... [more]
CADH2_ORYSJ1.552e-1231.97Cinnamyl alcohol dehydrogenase 2 OS=Oryza sativa s... [more]
ADH_STAES1.552e-1230.91Alcohol dehydrogenase OS=Staphylococcus epidermidi... [more]
MTDH3_STYHU2.027e-1228.35Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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