FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAAC (Alcohol dehydrogenase OS=Staphylococcus aureus (strain COL) GN=adh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGE-CKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +E+ ++   K  E  V+  Y  VCHTD+         +    LGHEG+G V    ++V+ +K GD V   ++ E C  CE CT+    LC     A  G  +D                     +E +++ A+Y VKV   +DP+ AS ++C   T Y A
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNA--GYTVDGAM------------------AEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAAB (Alcohol dehydrogenase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=adh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGE-CKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +E+ ++   K  E  V+  Y  VCHTD+         +    LGHEG+G V    ++V+ +K GD V   ++ E C  CE CT+    LC     A  G  +D                     +E +++ A+Y VKV   +DP+ AS ++C   T Y A
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNA--GYTVDGAM------------------AEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAA8 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain NCTC 8325) GN=adh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGE-CKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +E+ ++   K  E  V+  Y  VCHTD+         +    LGHEG+G V    ++V+ +K GD V   ++ E C  CE CT+    LC     A  G  +D                     +E +++ A+Y VKV   +DP+ AS ++C   T Y A
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNA--GYTVDGAM------------------AEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_STAA3 (Alcohol dehydrogenase OS=Staphylococcus aureus (strain USA300) GN=adh PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 47/162 (29.01%), Postives = 73/162 (45.06%), Query Frame = 3
Query:  129 LKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGE-CKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            + +E+ ++   K  E  V+  Y  VCHTD+         +    LGHEG+G V    ++V+ +K GD V   ++ E C  CE CT+    LC     A  G  +D                     +E +++ A+Y VKV   +DP+ AS ++C   T Y A
Sbjct:   12 VSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNA--GYTVDGAM------------------AEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKA 153          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_KLULA (Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN=ADH1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.927e-11
Identity = 56/184 (30.43%), Postives = 83/184 (45.11%), Query Frame = 3
Query:   69 MSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPL-YPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGA 611
            M+ S   T K V+ +  G  L+ ++I V  PK+ E+ + + Y+ VCHTD+   +G +P P   P V GHEG GVV + G+ VK  K GD   I    G C  CE C  E++N        L+G   D                   ++ +Y   DA    K+    D ++ + + C   T Y A
Sbjct:    1 MAASIPETQKGVIFYENGGELQYKDIPVPKPKANELLINVKYSGVCHTDLHAWKGDWPLPTKLPLVGGHEGAGVVVAMGENVKGWKIGDFAGIKWLNGSCMSCEYC--ELSNESNCPEADLSGYTHD------------------GSFQQYATADAVQAAKIPVGTDLAEVAPVLCAGVTVYKA 164          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH_PINTA (Probable cinnamyl alcohol dehydrogenase OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTT 599
            +V VK++Y  +CH+D++          YP V GHE VG+V   G EVK+ K G+ V +   +G C+ C NC   M   C K     N +  D T                  ++  MV+D  +VV++  ++    A+ L C   T
Sbjct:   36 DVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQ-------------GGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVT 167          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH_PINRA (Probable cinnamyl alcohol dehydrogenase OS=Pinus radiata GN=CAD PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 43/145 (29.66%), Postives = 66/145 (45.52%), Query Frame = 3
Query:  171 EVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTT 599
            +V VK++Y  +CH+D++          YP V GHE VG+V   G EVK+ K G+ V +   +G C+ C NC   M   C K     N +  D T                  ++  MV+D  +VV++  ++    A+ L C   T
Sbjct:   36 DVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQ-------------GGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVT 167          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: CADH2_TOBAC (Probable cinnamyl alcohol dehydrogenase 2 OS=Nicotiana tabacum GN=CAD19 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 49/175 (28.00%), Postives = 75/175 (42.86%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKST---EVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGY 605
            K+ + W   +P  +        ++T   +V+VK+LY  +CH+D+           YP V GHE VG V   G +V + K GD V +   +G C+ C  C  E+   C K     N +  D                    ++  MV+D N+VVK+   + P  A+ L C   T Y
Sbjct:    8 KSAIGWAARDPSGLLSPYTYTLRNTGPEDVQVKVLYCGLCHSDLHQVKNDLGMSNYPLVPGHEVVGKVVEVGADVSKFKVGDTVGVGLLVGSCRNCGPCKREIEQYCNKKIWNCNDVYTDGKPTQ-------------GGFANSMVVDQNFVVKIPEGMAPEQAAPLLCAGITVY 169          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 3
Query:   90 TCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLK-YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD-ASFLSCEFTTGY 605
            T  A       EPL    I    P   +V + + +A +CH+DI   +  +  P YP V GHE  GVV + G EV + ++GD V +  ++  C+EC +CT  +   C        N +  D        GQ      +   +SE +V+D NYV+++ P + P D A+ L C   T Y
Sbjct:    3 TVAAYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKD--------GQP-----TQGGYSEAIVVDENYVLRI-PDVLPLDVAAPLLCAGITLY 164          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 54/176 (30.68%), Postives = 82/176 (46.59%), Query Frame = 3
Query:   90 TCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIV-IPTYIGECKECENCTSEMTNLCLK-YPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSD-ASFLSCEFTTGY 605
            T  A       EPL    I    P   +V + + +A +CH+DI   +  +  P YP V GHE  GVV + G EV + ++GD V +  ++  C+EC +CT  +   C        N +  D        GQ      +   +SE +V+D NYV+++ P + P D A+ L C   T Y
Sbjct:    3 TVAAYAAMSATEPLTKTTITRRDPGPHDVAIDIKFAGICHSDIHTVKAEWGQPNYPVVPGHEIAGVVTAVGSEVTKYRQGDRVGVGCFVDSCRECNSCTRGIEQYCKPGANFTYNSIGKD--------GQP-----TQGGYSEAIVVDENYVLRI-PDVLPLDVAAPLLCAGITLY 164          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH_STAAC2.927e-1129.01Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAAB2.927e-1129.01Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA82.927e-1129.01Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH_STAA32.927e-1129.01Alcohol dehydrogenase OS=Staphylococcus aureus (st... [more]
ADH1_KLULA2.927e-1130.43Alcohol dehydrogenase 1 OS=Kluyveromyces lactis GN... [more]
CADH_PINTA3.823e-1129.66Probable cinnamyl alcohol dehydrogenase OS=Pinus t... [more]
CADH_PINRA3.823e-1129.66Probable cinnamyl alcohol dehydrogenase OS=Pinus r... [more]
CADH2_TOBAC3.823e-1128.00Probable cinnamyl alcohol dehydrogenase 2 OS=Nicot... [more]
ADHC_MYCTU3.823e-1130.68NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO3.823e-1130.68NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
back to top