FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH3_HORVU (Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.298e-40
Identity = 80/189 (42.33%), Postives = 117/189 (61.90%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECK+C +C SE +NLC  L+  +    ++ D  SR ++ G+ ++H    ST+SEY VI    + K++P         LSC  +TG GA    AK +K
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKDCAHCKSEESNLCDLLRINVDRGVMIGDGQSRFTINGKPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCVLSCGLSTGLGATLNVAKPKK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_PENAM (Alcohol dehydrogenase 1 OS=Pennisetum americanum GN=ADH1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.298e-40
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+LY S+CHTD+   E     P++PR+ GHE  G++ES G+ V +V  GD V+P + GECKEC +C S  +N+C    I  + G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P         LSC  +TG GA+   AK  K
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILYTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTVRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_DROME (Alcohol dehydrogenase class-3 OS=Drosophila melanogaster GN=Fdh PE=1 SV=3)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 85/193 (44.04%), Postives = 115/193 (59.59%), Query Frame = 3
Query:   63 LTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            ++ +  + ITCKA V W   +PL +E+I+V PPK+ EVR+K+    VCHTD     G  P  L+P VLGHEG G+VES G+ V   K GD VI  YI +C EC+ C S  TNLC K  +    G+M + TSR+S +GQ+L+H    ST++EY V+    + K++          L C  +TGYGAA   AKVE
Sbjct:    1 MSATEGKVITCKAAVAWEAKKPLVIEDIEVAPPKAHEVRIKITATGVCHTDAFTLSGADPEGLFPVVLGHEGAGIVESVGEGVTNFKAGDHVIALYIPQCNECKFCKSGKTNLCQKIRLTQGAGVMPEGTSRLSCKGQQLFHFMGTSTFAEYTVVADISLTKINEKAPLEKVCLLGCGISTGYGAALNTAKVE 193          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 75/185 (40.54%), Postives = 114/185 (61.62%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W   +P  +EEI+V PPK+ EVR+K+L   +C TD    +G     +P ++GHE  G+VES G+ V  VK GD VIP ++ +C+EC  C +   NLC++  I   G++ D T+R + +G+ ++H  + ST++EY V+D + V K+D +  P     + C F+TGYGAA K  KV+
Sbjct:    6 KVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIKGTMVSKFPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDITGRGVLADGTTRFTCKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTGYGAAVKTGKVK 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH2_MAIZE (Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.001e-40
Identity = 79/189 (41.80%), Postives = 116/189 (61.38%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I C+A V W  G+PL +EE++V PP++ EVR+K+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V +V  GD V+P + GECKEC +C SE +N+C  L+  +    ++ D  SR ++ GQ ++H    ST+SEY VI    + K++P         LSC  +TG GA    AK  K
Sbjct:    6 KVIKCRAAVTWEAGKPLSIEEVEVAPPQAMEVRIKILYTALCHTDVYFWEAKGQTPVFPRILGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECAHCKSEESNMCDLLRINVDRGVMIGDGKSRFTISGQPIFHFVGTSTFSEYTVIHVGCLAKINPEAPLDKVCILSCGISTGLGATLNVAKPAK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL_GADMO (Alcohol dehydrogenase class-3 chain L OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.920e-40
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I C+A V W  G+PL +EE++V PP++ EVR+K++   +CHTD     G  P  ++P VLGHEG G+VES G+ V + K GD VIP Y+ +C EC+ C +  TNLC K  +    GLM + TSR S  GQ L+H    ST+SEY V+    + KV           L C  +TGYGAA   AKVE
Sbjct:    5 KTIRCRAAVAWEAGKPLSMEEVEVAPPQAGEVRIKIVATGICHTDAYTLSGSDPEGVFPSVLGHEGAGIVESVGEGVTKFKSGDAVIPLYVPQCGECKFCKNPKTNLCQKIRLTQGKGLMPNGTSRFSCNGQVLFHFMGSSTFSEYTVVAEISLAKVHEKAPLDKVCLLGCAISTGYGAALNTAKVE 191          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 90/187 (48.13%), Postives = 111/187 (59.36%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + ITCKA V WG  EPL +E+IQV PPK+ EVRVK+ +++VCHTD     G  P   +P VLGHEG G+VES G+ V  V+ GD VI  Y  ECKEC+ C S  TNLC K       GLM D TSR S R + L H   CS++S+Y V+    +V +  S        L C  TTG+GA    AKVE
Sbjct:    6 KTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLMPDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVE 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_SPAAU (Alcohol dehydrogenase class-3 OS=Sparus aurata PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 83/187 (44.39%), Postives = 111/187 (59.36%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W  G+PL +EE++V PP + EVR+K+    VCHTD     G  P  L+P +LGHEG G VES G+ V + K GD VIP Y+ +C EC+ C +  TNLC K  I    GL+ D TSR + +G++++H    ST+SEY V+    + KV+          L C  +TGYGAA   AKVE
Sbjct:    6 KVIKCKAAVAWEPGKPLSIEEVEVAPPNAHEVRIKLFATGVCHTDAYTLSGSDPEGLFPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRITQGQGLLPDKTSRFTCKGKQVFHFMGTSTFSEYTVVADISLAKVNEKAPMDKVCLLGCGISTGYGAALNTAKVE 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_MAIZE (Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 86/191 (45.03%), Postives = 114/191 (59.69%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA--LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +  Q ITCKA V +   +PL +E++QV PP++ EVRVK+L+ ++CHTD     G  P  L+P +LGHE  G+VES G+ V +V+ GD VIP Y  ECKEC+ C S  TNLC K   A  +  +M D  SR SV G+ +YH    ST+S+Y V+    V K++P         L C   TG GA W  AKVE
Sbjct:    5 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSATGVGVMMNDMKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCGVPTGLGAVWNTAKVE 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_MAIZE (Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.119e-40
Identity = 79/189 (41.80%), Postives = 115/189 (60.85%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+L+ S+CHTD+   E     P++PR+ GHE  G++ES G+ V +V  GD V+P + GECKEC +C S  +N+C  L+       ++ D  SR S+ G+ +YH    ST+SEY V+    V K++P         LSC ++TG GA+   AK  K
Sbjct:    6 KVIKCKAAVAWEAGKPLSIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIIESVGEGVTDVAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIADGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPQAPLDKVCVLSCGYSTGLGASINVAKPPK 194          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH3_HORVU2.298e-4042.33Alcohol dehydrogenase 3 OS=Hordeum vulgare GN=ADH3... [more]
ADH1_PENAM2.298e-4043.39Alcohol dehydrogenase 1 OS=Pennisetum americanum G... [more]
ADHX_DROME3.001e-4044.04Alcohol dehydrogenase class-3 OS=Drosophila melano... [more]
ADH7_HUMAN3.001e-4040.54Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH2_MAIZE3.001e-4041.80Alcohol dehydrogenase 2 OS=Zea mays GN=ADH2 PE=2 S... [more]
ADHL_GADMO3.920e-4044.39Alcohol dehydrogenase class-3 chain L OS=Gadus mor... [more]
FADH1_SCHPO5.119e-4048.13Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHX_SPAAU5.119e-4044.39Alcohol dehydrogenase class-3 OS=Sparus aurata PE=... [more]
ADHX_MAIZE5.119e-4045.03Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH P... [more]
ADH1_MAIZE5.119e-4041.80Alcohol dehydrogenase 1 OS=Zea mays GN=ADH1 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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