FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14390 contig Ccv1_Contig14390:12..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40
Identity = 82/194 (42.27%), Postives = 115/194 (59.28%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +  + I CKA + W  G+PL VEEI+V PPK  EVRVK++   VC TD    +  F   ++P +LGHEG G+VES G  V + K GD VIP Y+ +C  C+ C +  TNLC     +K PI+   +M D TSR + +G+ +YH    ST+SEY V+  + + K+D +        + C F+TGYGAA   A+VE
Sbjct:    2 TEGKVIKCKAAIAWEAGKPLSVEEIEVSPPKDHEVRVKIVATGVCRTDEHAINPSFKEGVFPVILGHEGAGIVESIGQGVSKFKPGDKVIPLYMPQCGHCKFCLNPKTNLCEKISKIKTPISDQEVMSDGTSRFTCKGKPIYHFMGTSTFSEYTVVSESSLAKIDAAAPLDKVCLIGCGFSTGYGAAINTAQVE 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_TRIRP (Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH1 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40
Identity = 84/192 (43.75%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   69 MSNS--QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAK 629
            MSN+  Q I C+A V W  G+PL +EE++V PP++ EVR+K+L+ S+CHTD+   E     PL+PR+ GHE  G+VES G+ V  +K GD  +P + GEC EC +C SE +N+C    I  + G+M+ D+ SR S++GQ ++H    ST+SEY V+ A  V K++P         LSC   TG GA    AK
Sbjct:    1 MSNTAGQVIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCNLLRINTDRGVMINDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATVNVAK 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_PEA (Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.732e-40
Identity = 85/192 (44.27%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   69 MSNS--QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAK 629
            MSN+  Q I C+A V W  G+PL +EE++V PP++ EVR+K+L+ S+CHTD+   E     PL+PR+ GHE  G+VES G+ V  +K GD  +P + GEC EC +C SE +N+C    I  + G+ML D+ SR S++GQ ++H    ST+SEY V+ A  V K++P         LSC   TG GA    AK
Sbjct:    1 MSNTVGQIIKCRAAVAWEAGKPLVIEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGECPHCKSEESNMCDLLRINTDRGVMLNDNKSRFSIKGQPVHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAK 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.140e-39
Identity = 84/187 (44.92%), Postives = 117/187 (62.57%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA + W + +PL +E+I+V PPK+ EVR+K+L   +C +D  + S  F  PL P VLGHE  GVVES G+ V  VK GD VIP ++ +C +C +C S   NLC    + A  GLM D TSR + +G+ L+H  S S+++EY V+  N VVK+D +        + C F+TGYGAA + AKVE
Sbjct:    5 KVIKCKAAIAWEIKKPLSIEQIEVAPPKAHEVRIKILATGICRSDDHVISGAFKMPL-PMVLGHEAAGVVESVGEGVTCVKPGDKVIPLFVPQCGKCSSCRSTRGNLCTSNDLSAATGLMPDGTSRFTCKGKSLHHFISTSSFTEYTVVHENSVVKIDAAAPLEKVCLIGCGFSTGYGAAVETAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH_CANMA (S-(hydroxymethyl)glutathione dehydrogenase OS=Candida maltosa GN=FDH1 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.489e-39
Identity = 85/186 (45.70%), Postives = 109/186 (58.60%), Query Frame = 3
Query:   87 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            ITCKA V W   +PL +E++ V PPK  EVR+K+    VCHTD     G  P   +P +LGHEG G+VES G+ V  VK GD VI  Y  EC EC+ C S  TNLC K       G+M D TSR + +G+++ H   CST+S+Y V+    VV ++P  +   A  L C  TTGYGAA   A V+K
Sbjct:   10 ITCKAAVAWEAAKPLSIEDVTVAPPKRHEVRIKLYDTGVCHTDAYTLSGVDPEGAFPVILGHEGAGIVESIGEGVTNVKVGDHVIALYTPECGECKFCKSGKTNLCGKIRATQGKGVMPDGTSRFTCKGKEILHFMGCSTFSQYTVVADISVVAINPKAEFDKACLLGCGITTGYGAATITANVQK 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHX_DICDI (Alcohol dehydrogenase class-3 OS=Dictyostelium discoideum GN=adh5 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.489e-39
Identity = 88/193 (45.60%), Postives = 118/193 (61.14%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVID--ANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            +  + ITCKA V W   +PL +E+I+V+PP+  EVR+K+LY  VCHTD     G  P  ++P +LGHEG G+VES G+ V  VK GD VIP YI EC  C+ CTS  TNLC K  I    G M D T+R   +G++++H    ST+S+Y V+   +  VV+ D  +D      L C  TTG+GAA   AKVE+
Sbjct:    3 TEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDSYTLSGSDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTNLCSKIRITQGKGQMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLD--KVCLLGCGITTGFGAAKITAKVEE 193          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.489e-39
Identity = 83/202 (41.09%), Postives = 123/202 (60.89%), Query Frame = 3
Query:   48 KSTAILTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPL--YPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY--PIALNGLMLDSTSRMSVR-GQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + T++ ++   + I CKA V    GE L +EEI V+PP++ EVR+K++  S+CHTD+  S+    PL  +PR+LGHE VGV+ES G+ V   ++GD+V+P +   C+EC +C S  +N C ++      N      TSR     G+ +YH    S++SEY V+D  ++VK+ P I    A+ LSC  +TG GAAWK A VEK
Sbjct:    2 EKTSMFSIHEGKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARFPRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSNTRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTGIGAAWKVANVEK 203          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_PETHY (Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.945e-39
Identity = 82/189 (43.39%), Postives = 115/189 (60.85%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            Q I CKA V W  G+PL +EE++V PP+  EVR+K+L+ S+CHTD+   E     PL+PR+ GHE  G+VES G+ V ++K GD V+P + GEC++C +C SE +N+C    I  + G+M+ D  +R S  G+ +YH    ST+SEY V  +  V K+DP         LSC  +TG GA    AK  K
Sbjct:    8 QVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRINTDRGVMIHDGQTRFSKDGKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSCGISTGLGATLNVAKPTK 196          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 87/191 (45.55%), Postives = 110/191 (57.59%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAP-LYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            +  Q I CKA V W  G+ L +EEI+V PP++ EVRVK+ +  VCHTD     G  A   +P V GHEG GVVES G+ V+ VK GD V+  Y  EC+EC+ C S  TNLC K       GL+ D TSR   +G+ L+H   CS++S+Y V+    VVKV           L C  TTGYGAA   AK+ K
Sbjct:    3 TEGQIIKCKAAVAWEAGKDLSIEEIEVLPPRAHEVRVKVEFTGVCHTDAYTLSGADAEGSFPVVFGHEGAGVVESVGEGVESVKVGDSVVLLYTPECRECKFCLSGKTNLCGKIRATQGKGLLPDGTSRFRCKGKDLFHYMGCSSFSQYTVVADISVVKVQDEAPKDKTCLLGCGVTTGYGAAINTAKISK 193          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH_FRAAN (Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH PE=3 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 81/195 (41.54%), Postives = 119/195 (61.03%), Query Frame = 3
Query:   63 LTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPA-PLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            ++ +  + I C+A V W  G+PL +EE++V PP++  VRVK+LY S+CHTD+   E     PL+PR+ GHE  G+VES G+ V ++K GD V+P + GECKEC++C SE +N+C    I  + G+ML D  SR S++G+ +YH    ST+S Y V     + K++P         LSC  +TG GA     K +K
Sbjct:    1 MSSTEGKVICCRAAVAWEAGKPLVIEEVEVAPPQANVVRVKILYTSLCHTDVYFWEAKGQNPLFPRIYGHEAGGIVESVGEGVTDLKAGDHVLPVFTGECKECDHCKSEESNMCDLLRINTDRGVMLNDGKSRFSIKGKPIYHFVGTSTFSVYTVTHVGCLAKINPQSPLDKVCILSCGISTGLGATLNVRKPKK 195          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH4_STRCA8.732e-4042.27Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH... [more]
ADH1_TRIRP8.732e-4043.75Alcohol dehydrogenase 1 OS=Trifolium repens GN=ADH... [more]
ADH1_PEA8.732e-4044.27Alcohol dehydrogenase 1 OS=Pisum sativum PE=3 SV=1[more]
ADH1A_UROHA1.140e-3944.92Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
FADH_CANMA1.489e-3945.70S-(hydroxymethyl)glutathione dehydrogenase OS=Cand... [more]
ADHX_DICDI1.489e-3945.60Alcohol dehydrogenase class-3 OS=Dictyostelium dis... [more]
ADHL5_ARATH1.489e-3941.09Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
ADH1_PETHY1.945e-3943.39Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1... [more]
FADH_PICPA2.541e-3945.55S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADH_FRAAN2.541e-3941.54Alcohol dehydrogenase OS=Fragaria ananassa GN=ADH ... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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