FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14390 contig Ccv1_Contig14390:12..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH2_HORVU (Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.541e-39
Identity = 80/189 (42.33%), Postives = 114/189 (60.32%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC--LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++  PP++ EVR K+LY ++CHTD+   E     P++PR+LGHE  G+VES G+ V E+  GD V+P + GECKEC +C SE +NLC  L+  +    ++ D  SR ++ G+ ++H    ST+SEY VI    V K+DP         LSC  +TG GA     K +K
Sbjct:    6 KVIKCKAAVAWEAGKPLSMEEVEDAPPQAMEVRDKILYTALCHTDVYFWEANGQTPVFPRILGHEAGGIVESVGEGVTELVPGDHVLPVFTGECKECAHCMSEESNLCDLLRINVDRGVMIDDGQSRFTIDGKPIFHFLGTSTFSEYTVIHVGCVAKIDPEAPLDKVCLLSCGISTGLGATLNVTKPKK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 89/187 (47.59%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   87 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            I C A V +   +PL VEEI V+ PK+ EVR+K+ Y +VCHTD     G  P  L+P VLGHEG G+VES GD+V  VK GD VI  Y  EC +C+ CTS  TNLC         G+M D T+R  + +G+ +YH   CST+SEY V+    VV +DP      A  L C  TTG+GAA K A V+K
Sbjct:   10 IKCIAAVAYDAKKPLSVEEITVDAPKAHEVRIKIEYTAVCHTDAYTLSGSDPEGLFPCVLGHEGAGIVESVGDDVITVKPGDHVIALYTAECGKCKFCTSGKTNLCGAVRATQGKGVMPDGTTRFHNAKGEDIYHFMGCSTFSEYTVVADVSVVAIDPKAPLDAACLLGCGVTTGFGAALKTANVQK 196          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 161.77 bits (408), Expect = 3.318e-39
Identity = 81/193 (41.97%), Postives = 115/193 (59.59%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEG-FPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + I CKA + W  G+PL +EE++V PPK+ EVR++++  S+CHTD    +  F    +P ++GHE  G+VES G  V  VK GD VIP Y   C++C+ C S +TNLC     LK P +   LM D TSR + +G+ +YH F  ST+S+Y V+    + K+D   +      L C F+TGYGAA   AKV
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFEGLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNLKSPASDQQLMEDKTSRFTCKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLLGCGFSTGYGAAINNAKV 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_HORVU (Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.334e-39
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W  G+PL +EE++V PP++ EVRVK+L+ S+CHTD+   E     P++PR+ GHE  G+VES G+ V +V  GD V+P + GECKEC +C S  +N+C    I  + G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P         LSC  +TG GA+   AK  K
Sbjct:    6 KVIKCKAAVAWEAGKPLTMEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQIPMFPRIFGHEAGGIVESVGEGVTDVAPGDHVLPVFTGECKECPHCKSAESNMCDLLRINTDRGVMIGDGKSRFSIGGKPIYHFVGTSTFSEYTVMHVGCVAKINPEAPLDKVCVLSCGISTGLGASINVAKPPK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.654e-39
Identity = 80/193 (41.45%), Postives = 113/193 (58.55%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-----PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + I CKA + W  G+PL +EE++V PPK+ EVRV++  A +C +D  + +  F     P +LGHEG G+VES G  V  VK GD VIP YI  CK+C+ C S +TN C K+     P+    LM D TSR + +G+ +YH F  S +S+Y V+    + K+D   +      + C F+TGYGAA   AKV
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPKFEGAFLPVILGHEGAGIVESVGPGVTNVKPGDKVIPLYIPHCKKCKFCLSPLTNFCEKFCKGKNPLIEQELMEDKTSRFTCKGKSIYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKV 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 1.261e-38
Identity = 79/193 (40.93%), Postives = 114/193 (59.07%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-----PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + I CKA + W  G+PL +EE++V PPK+ EVRV+++ ASVC +D  + +  F   L P +LGHE  G+VES G  V   K GD VIP Y+  C++C+ C S +TN C K+     PI    LM D TSR + +G+ +YH    S +S+Y V+    + K+D   +      + C F+TGYGAA  +AKV
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKV 195          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.261e-38
Identity = 84/195 (43.08%), Postives = 119/195 (61.03%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDIL---CSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY--PIALNGLMLDSTSRM-SVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            +  + ITCKA +C   GE L +E+I V+PP++ EVR+K+L  S+CHTD+     S G P   +PR+LGHE VGVVES G+ V   K+GD+V+P +   C+EC++C S  TN C +Y      N       SR     G+ ++H    S++SEY V+D  ++VK+ P I    A+ LSC  +TG GAAWK A VE+
Sbjct:    9 NEGKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFG-PISRFPRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISNTRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTGIGAAWKVANVEE 202          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSJ (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=ADH1 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 2.151e-38
Identity = 80/189 (42.33%), Postives = 115/189 (60.85%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W   +PL +EE++V PP++ EVRVK+L+ S+CHTD+   E     P++PR+ GHE  G+VES G+ V ++  GD V+P + GECKEC +C S  +N+C    I  + G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P+        LSC  +TG GA    AK  K
Sbjct:    6 KVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_ORYSI (Alcohol dehydrogenase 1 OS=Oryza sativa subsp. indica GN=ADH1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.151e-38
Identity = 80/189 (42.33%), Postives = 115/189 (60.85%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN-GLML-DSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            + I CKA V W   +PL +EE++V PP++ EVRVK+L+ S+CHTD+   E     P++PR+ GHE  G+VES G+ V ++  GD V+P + GECKEC +C S  +N+C    I  + G+M+ D  SR S+ G+ +YH    ST+SEY V+    V K++P+        LSC  +TG GA    AK  K
Sbjct:    6 KVIKCKAAVAWEAAKPLVIEEVEVAPPQAMEVRVKILFTSLCHTDVYFWEAKGQTPVFPRIFGHEAGGIVESVGEGVTDLAPGDHVLPVFTGECKECAHCKSAESNMCDLLRINTDRGVMIGDGKSRFSINGKPIYHFVGTSTFSEYTVMHVGCVAKINPAAPLDKVCVLSCGISTGLGATINVAKPPK 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FRMA_PASPI (S-(hydroxymethyl)glutathione dehydrogenase OS=Pasteurella piscicida GN=frmA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.809e-38
Identity = 86/183 (46.99%), Postives = 106/183 (57.92%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            +A V +G G PL++ EI V PPK  EV VK+ +  VCHTD     G  P  L+P VLGHEG GVV   G+ V  VK GD VIP Y  EC EC+ CTS  TNLC+        G+M D+TSR  V GQ LYH   CST+SEY V+    + K++P  +      L C  TTG GA    AKV++
Sbjct:    4 RAAVAFGPGLPLEIVEIDVAPPKKGEVLVKISHTGVCHTDAYTLSGDDPEGLFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECDFCTSGKTNLCVAVRETQGKGVMPDATSRFFVNGQPLYHYMGCSTFSEYTVVAEVSLAKINPQANAEQVCLLGCGVTTGIGAVHNTAKVQE 186          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH2_HORVU2.541e-3942.33Alcohol dehydrogenase 2 OS=Hordeum vulgare GN=ADH2... [more]
FADH_YEAST3.318e-3947.59S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc... [more]
ADH4_HUMAN3.318e-3941.97Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE... [more]
ADH1_HORVU4.334e-3943.39Alcohol dehydrogenase 1 OS=Hordeum vulgare GN=ADH1... [more]
ADHP_RABIT9.654e-3941.45Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADHQ_RABIT1.261e-3840.93Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADHL1_ARATH1.261e-3843.08Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADH1_ORYSJ2.151e-3842.33Alcohol dehydrogenase 1 OS=Oryza sativa subsp. jap... [more]
ADH1_ORYSI2.151e-3842.33Alcohol dehydrogenase 1 OS=Oryza sativa subsp. ind... [more]
FRMA_PASPI2.809e-3846.99S-(hydroxymethyl)glutathione dehydrogenase OS=Past... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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