FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14390 contig Ccv1_Contig14390:12..715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.669e-38
Identity = 75/186 (40.32%), Postives = 112/186 (60.22%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA + W + +P  +EEI+V PPK+ EVR+K+L   +C +D   + G      P +LGHE  GVVES G+ V  +K GD VIP ++ +C EC  C     NLC++  + + +GLM D TSR + +G+ ++H    ST++EY V+    V ++D +        + C F+TGYGAA K+AKVE
Sbjct:    5 KVIKCKAAITWEIKKPFSIEEIEVAPPKAHEVRIKILATGICRSDDHVTAGLLTMPLPMILGHEAAGVVESTGEGVTSLKPGDKVIPLFVPQCGECMPCLKSNGNLCIRNDLGSPSGLMADGTSRFTCKGKDIHHFIGTSTFTEYTVVHETAVARIDAAAPLEKVCLIGCGFSTGYGAAVKDAKVE 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 4.791e-38
Identity = 79/192 (41.15%), Postives = 111/192 (57.81%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + I CKA + W  G PL +EEI+V PPK+ EVR++++   VC TDI  ++     L+P VLGHE  G+VES G  V   K GD VIP +  +CK C+ C S +TNLC      KYP     LM D TSR + +G+ +YH    S++S+Y V+    + +VD   +      + C F++GYGAA   AKV
Sbjct:    3 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKV 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_CHICK (Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.067e-37
Identity = 73/187 (39.04%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN--GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W   +P  +EE++V PPK+ EVR+K++   +C +D     G  A  +P +LGHE  GV+ES G++V  +K GD VIP ++ +C EC +C S   NLC+K  ++ +  GLM D T+R + +G+ ++H    ST++EY V+      K+D +        + C F+TGYGA  + AKVE
Sbjct:    6 KVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPIILGHEAAGVIESVGEKVTSLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFVGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 192          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 78/197 (39.59%), Postives = 113/197 (57.36%), Query Frame = 3
Query:   51 STAILTMSNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLM-LDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            S +  +    Q ITC A V W  GEPL +EE++V PP+  E+R+K++  S+C +D+   E     L PR+ GHE  G+VES G+ V E ++GD V+  + GEC  C +C S  +N+C    +   GLM  D  +R S++G+ +YH  + S++SEY V+ +   VKVDP         LSC    G GAAW  A V+K
Sbjct:    2 SASSSSFEQPQVITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWES--QSLLPRIFGHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVQK 196          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH4_RAT (Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Adh4 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 80/192 (41.67%), Postives = 110/192 (57.29%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLC-----LKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  + ITCKA + W    PL +EEI+V PPK+ EVR+K++   VC TDI  +      L+P VLGHE  G+VES G  V   K GD VIP +  +CK+C+ C S +TNLC      KYP     LM D TSR + + + +YH    S++S+Y V+    + +VD   +      + C FT+GYGAA   AKV
Sbjct:    3 TQGKVITCKAAIAWKTDSPLCIEEIEVSPPKAHEVRIKVIATCVCPTDINATNPKKKALFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKKCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTSKERSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFTSGYGAAINTAKV 194          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_COTJA (Alcohol dehydrogenase 1 OS=Coturnix coturnix japonica GN=ADH1 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.394e-37
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALN--GLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W   +P  +EE++V PPK+ EVR+K++   +C +D     G  A  +P +LGHE  GVVES G++V  +K GD VIP ++ +C EC +C S   NLC+K  ++ +  GLM D T+R + +G+ ++H    ST++EY V+      K+D +        + C F+TGYGA  + AKVE
Sbjct:    5 KVIKCKAAVLWEANKPFSLEEVEVAPPKAHEVRIKIVATGICRSDDHVVTGALAMPFPVILGHEAAGVVESVGEKVTLLKPGDAVIPLFVPQCGECRSCLSTKGNLCIKNDLSSSPTGLMADGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAAAKIDSAAPLEKVCLIGCGFSTGYGAVLQTAKVE 191          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 76/185 (41.08%), Postives = 109/185 (58.92%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP  + +C +C  C +  +N CLK  ++   G + D TSR + RG+ ++H    ST+S+Y V+D N V K+D +   +    + C F+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAQEVRIKMVAVGICGTDDHVVSGTMVTPLPAILGHEAAGIVESVGEGVTTVKPGDKVIPLAVPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRGKPIHHFLGISTFSQYTVVDENAVAKIDAASPLAKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37
Identity = 83/182 (45.60%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM D T+R S  GQ LYH   CST+SEY V+    + K++P  +      L C  TTG GA    AKV+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37
Identity = 83/182 (45.60%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM D T+R S  GQ LYH   CST+SEY V+    + K++P  +      L C  TTG GA    AKV+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.056e-37
Identity = 83/182 (45.60%), Postives = 103/182 (56.59%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y  EC ECE C S  TNLC+        GLM D T+R S  GQ LYH   CST+SEY V+    + K++P  +      L C  TTG GA    AKV+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH1_ALLMI3.669e-3840.32Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH4_MOUSE4.791e-3841.15Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADH1_CHICK1.067e-3739.04Alcohol dehydrogenase 1 OS=Gallus gallus GN=ADH1 P... [more]
ADHL6_ARATH1.394e-3739.59Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH4_RAT1.394e-3741.67Alcohol dehydrogenase 4 OS=Rattus norvegicus GN=Ad... [more]
ADH1_COTJA1.394e-3739.57Alcohol dehydrogenase 1 OS=Coturnix coturnix japon... [more]
ADH1A_PONAB2.378e-3741.08Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]
FRMA_SHISS4.056e-3745.60S-(hydroxymethyl)glutathione dehydrogenase OS=Shig... [more]
FRMA_ECOUT4.056e-3745.60S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOSM4.056e-3745.60S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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