FC931792

Overview
NameFC931792
Unique NameFC931792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.180e-36
Identity = 77/189 (40.74%), Postives = 112/189 (59.26%), Query Frame = 3
Query:   72 SNSQAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTD--ILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            +  Q I CKA + W  G P  +EE++V PPK+ EVR+K++   +C T+  +L S+     LYP +LGHEG G+VES G+ V  VK GD VI  ++ +C EC +C +   N C+++  +   LM D TSR + +G+ +YH  + ST+ EY VI    V K+D          +SC F+TG+GAA   AKV
Sbjct:    3 TTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDL-LYPTILGHEGAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSETQLMSDGTSRFTCKGKSIYHFGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_APTAU (Alcohol dehydrogenase 1 OS=Apteryx australis GN=ADH1 PE=1 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 1.180e-36
Identity = 77/186 (41.40%), Postives = 109/186 (58.60%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            + I CKA V W   +P  +EE++V PPK+ EVR+K+L   +C +D     G     +P +LGHE  GVVES G+ V  VK GD VIP ++ +C EC  C S   NLC K  I + +GLM D T+R + +G+ ++H    ST++EY V+    V K+  +        + C F+TGYGAA + AKVE
Sbjct:    6 KVIKCKAAVLWEPKKPFSIEEVEVAPPKAHEVRIKILATGICRSDDHVITGALVRPFPIILGHEAAGVVESVGEGVTSVKPGDKVIPLFVPQCGECSACLSTKGNLCSKNDIGSASGLMPDGTTRFTCKGKAIHHFIGTSTFTEYTVVHETAVAKIAAAAPLEKVCLIGCGFSTGYGAAVQTAKVE 191          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FADH2_SCHPO (Putative S-(hydroxymethyl)glutathione dehydrogenase 2 OS=Schizosaccharomyces pombe GN=SPCC13B11.04c PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.541e-36
Identity = 83/186 (44.62%), Postives = 104/186 (55.91%), Query Frame = 3
Query:   87 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVEK 638
            I CKA V W    PL +E +QV PP+  EVR+K++ + VCHTD     G  P  L+P +LGHEG G+VES G +V  V+ GD VI  Y  ECK C+ C S  TNLC +       GLM D TSR S  G  L H   CST+SEY V+    VV ++          L C  TTGYGAA   A +++
Sbjct:   11 INCKAAVAWQPAAPLSIENVQVFPPRVHEVRIKIVNSGVCHTDAYTLSGKDPEGLFPVILGHEGAGIVESVGPQVTTVQVGDPVIALYTPECKTCKFCKSGKTNLCGRIRTTQGKGLMPDGTSRFSCNGNTLLHFMGCSTFSEYTVVADISVVAIERLAPLDSVCLLGCGITTGYGAATITADIKE 196          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.013e-36
Identity = 80/186 (43.01%), Postives = 112/186 (60.22%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDI-LCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W   +P  +E+I+V PPK+ EVR+KM+   VC +D  + S    +PL P VLGHEG G+VES G+ V  VK GD VIP +  +C +C  C     NLC+K  +    G +LD TSR + RG+ +++  S ST+S+Y V+D   V K+D +        + C F+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWEPHKPFSIEDIEVAPPKAHEVRIKMVATGVCRSDDHVVSRSLASPL-PAVLGHEGAGIVESVGEGVTSVKPGDKVIPLFTPQCGKCRICKHPEYNLCMKNDLMQPRGTLLDGTSRFTCRGKAIHNFISTSTFSQYTVVDEMAVAKIDGASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1_RABIT (Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus GN=ADH1 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.629e-36
Identity = 75/185 (40.54%), Postives = 108/185 (58.38%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIAL-NGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C +D     G  A   P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C    +N CL   +    G++LD TSR + +G+ ++H    ST+S+Y V+D   V K+D +        + C F+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWQLNKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHAVTGSIAVPLPVILGHEAAGIVESIGEGVTTVKPGDKVIPLFTPQCGKCRICKHPESNFCLINDLGKPKGMLLDGTSRFTCKGKPIHHFIGTSTFSQYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGSAVKVAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.434e-36
Identity = 82/182 (45.05%), Postives = 102/182 (56.04%), Query Frame = 3
Query:   96 KAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGF-PAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKY-PIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKVE 635
            +A V +  G+PL++ EI V PPK  EV +K+ +  VCHTD     G  P  ++P VLGHEG GVV   G+ V  VK GD VIP Y   C ECE C S  TNLC+        GLM D T+R S  GQ LYH   CST+SEY V+    + K++P  +      L C  TTG GA    AKV+
Sbjct:    4 RAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQ 185          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1S_HORSE (Alcohol dehydrogenase S chain OS=Equus caballus PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 76/184 (41.30%), Postives = 105/184 (57.07%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W   +P  +EE++V PPK+ EVR+KM+ A +C +D     G      P + GHE  G+VES G+ V  V+ GD VIP +I +C +C  C     NLCLK      G M D TSR + RG+ ++H    ST+S+Y V+D   V K+D +        + C F+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDDHVVSGTLVAPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLKNLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCGFSTGYGSAVKVAKV 189          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.485e-36
Identity = 76/185 (41.08%), Postives = 107/185 (57.84%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+   +C TD     G      P +LGHE  G+VES G+ V  VK GD VIP  I +C +C  C +  +N CLK  ++   G + D TSR + R + ++H    ST+S+Y V+D N V K+D +        + C F+TGYG+A   AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSNPQGTLQDGTSRFTCRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVNVAKV 190          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH8_RANPE (NADP-dependent alcohol dehydrogenase OS=Rana perezi GN=ADH8 PE=1 SV=3)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 81/183 (44.26%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   87 ITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPI-ALNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            ITCKA V W   +PL +E I V PPK+ EVR+K+L + +C +D    +      +P +LGHE VGVVES G  V  VK GD VIP ++ +C  C  C S  +N C K  + A  GLM D TSR + RG+ +Y++   ST++EY V+    V K+DP   P ++  + C F TGYGAA   AKV
Sbjct:    8 ITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKFPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLVGTSTFTEYTVVADIAVAKIDPKA-PLESCLIGCGFATGYGAAVNTAKV 189          
BLAST of FC931792 vs. ExPASy Swiss-Prot
Match: ADH1G_HUMAN (Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.857e-36
Identity = 75/185 (40.54%), Postives = 107/185 (57.84%), Query Frame = 3
Query:   81 QAITCKAVVCWGLGEPLKVEEIQVEPPKSTEVRVKMLYASVCHTDILCSEGFPAPLYPRVLGHEGVGVVESAGDEVKEVKEGDIVIPTYIGECKECENCTSEMTNLCLKYPIA-LNGLMLDSTSRMSVRGQKLYHIFSCSTWSEYMVIDANYVVKVDPSIDPSDASFLSCEFTTGYGAAWKEAKV 632
            + I CKA V W L +P  +EE++V PPK+ EVR+KM+ A +C +D     G      P +LGHE  G+VES G+ V  VK GD VIP +  +C +C  C +  +N CLK  +    G + D T R +  G+ ++H    ST+S+Y V+D N V K+D +        + C F+TGYG+A K AKV
Sbjct:    6 KVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVSGNLVTPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPRGTLQDGTRRFTCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTGYGSAVKVAKV 190          
The following BLAST results are available for this feature:
BLAST of FC931792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ADH6_PONAB1.180e-3640.74Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH1_APTAU1.180e-3641.40Alcohol dehydrogenase 1 OS=Apteryx australis GN=AD... [more]
FADH2_SCHPO1.541e-3644.62Putative S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH1_PERMA2.013e-3643.01Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ... [more]
ADH1_RABIT2.629e-3640.54Alcohol dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
FRMA_ECOL63.434e-3645.05S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
ADH1S_HORSE4.485e-3641.30Alcohol dehydrogenase S chain OS=Equus caballus PE... [more]
ADH1A_HUMAN4.485e-3641.08Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH8_RANPE5.857e-3644.26NADP-dependent alcohol dehydrogenase OS=Rana perez... [more]
ADH1G_HUMAN5.857e-3640.54Alcohol dehydrogenase 1C OS=Homo sapiens GN=ADH1C ... [more]

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Properties
Property NameValue
Genbank descriptionC34201C04EF PostHarveN Citrus clementina cDNA clone C34201C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931792 ID=FC931792; Name=FC931792; organism=Citrus clementina; type=EST; length=704bp
GATGCAGAGCTCATCTCCTTATCGACAGTTTGAAATTCGAGGCTGCAAAA
TCTACAGCAATACTAACAATGAGCAATTCACAAGCCATAACGTGCAAAGC
TGTGGTATGTTGGGGTTTAGGAGAGCCATTAAAGGTAGAGGAGATACAAG
TAGAGCCTCCGAAATCAACTGAAGTTAGGGTTAAGATGCTTTATGCCAGT
GTTTGTCACACTGATATCCTTTGCTCTGAAGGATTCCCAGCGCCTCTTTA
TCCTCGTGTTCTCGGGCACGAAGGTGTCGGGGTGGTGGAGAGTGCTGGGG
ATGAAGTGAAAGAAGTGAAAGAAGGAGATATTGTGATTCCAACTTATATT
GGAGAATGTAAAGAATGTGAAAATTGCACATCAGAAATGACCAATTTATG
CCTAAAATATCCAATAGCACTGAACGGTTTAATGCTTGATAGCACTTCAA
GAATGTCCGTAAGAGGCCAAAAATTGTATCACATTTTTTCATGCTCCACT
TGGTCTGAATATATGGTCATCGATGCCAATTATGTAGTCAAAGTTGATCC
AAGCATTGATCCCTCGGATGCTAGCTTCCTTTCATGTGAATTTACAACTG
GTTATGGGGCGGCTTGGAAGGAAGCCAAAGTTGAAAAAGGATCTAGTGTT
GCTGTTTTAGGGCTTGGTACTGTTGGATTAGGGGCTGTTGATGGAGCCAG
GATG
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