FC931799
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18 Identity = 55/177 (31.07%), Postives = 92/177 (51.98%), Query Frame = 3 Query: 129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659 K+ F+ + ++E L +E Y+G E+ TPM T + I A R ++G+ G+ I+ L +++K F + ++ + L A A L L G RRA + +R IM +GA G EVIVSGK+ ++RAK K K+G + +G ++ +D A+ L+ G+ G+ Sbjct: 5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKMGIYGV 179
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18 Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 3 Query: 168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659 L+E L + GY+G+E+ TP ++I A ++G G IR+L +++Q F +V + V + L A A + L + RR +LR +ME+GA G E+I+SGKLR++RA+ K K G + +G V+ +D AV + LL++GV G+ Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGV 181
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2) HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17 Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 3 Query: 168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 + E L LA+ GY E+ TP+ T I+I A R ++G KG ++E++S++ + +++ K+ L A + + G+ RR + +R +ME+GAKG E++VSGKL +RAK K G + G + AV VLL+ G+ GI R Sbjct: 24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16 Identity = 50/181 (27.62%), Postives = 93/181 (51.38%), Query Frame = 3 Query: 126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 K+++FV D + ++E L +E G+ G+E++ TP T I + R V+G G +I+E+T ++KRF +E+ ++VN L ++ + L G R+A LR +++ A G + + GK+ +RA++ KF G + SG+P ++ L+ G++G+ R Sbjct: 2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVR 180
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16 Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = 3 Query: 168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 + E L +L++ GY E+ TP+ T I+I A R ++G+KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV VLL+ G+ GI R Sbjct: 24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16 Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3 Query: 168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R +ME+GAKG E++VSGKL +RA+ K G + G + AV VLL+ G+ GI R Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2) HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15 Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3 Query: 168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 + E L L++ GY E+ TP+ T I+I A R ++G KG ++E+++++ + +++ K+ + A + + G+ RR + +R + E+GAKG E++VSGKL +RA+ K G + G + AV VLL+ G+ GI R Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14 Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = 3 Query: 165 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668 +L E L + + G+SGVEV P T+I + TR V+G KG IRELT ++K F V++ +++ L + + G A RRA ++ IME A G ++ +SGKLR R+ K G + +G + + V V G++GIR R Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIR 182
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13 Identity = 47/178 (26.40%), Postives = 93/178 (52.25%), Query Frame = 3 Query: 126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659 K+RKFV + V + E L +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L+ +++GA+G + +SGK+ +RA+ KF G + SG+P ++ + L+ G+LG+ Sbjct: 2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGV 177
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 46/178 (25.84%), Postives = 93/178 (52.25%), Query Frame = 3 Query: 126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659 K+RKF+ + V + E + +E G+ + ++ TP T I + R V+G +G +++++T ++K++ +E+ + V + L A+ + L G + R+A L +++GAKG + +SGK+ +RA+ KF G + SG+P ++ + + L+ G+LG+ Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGV 177 The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 70
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Sequences
The
following sequences are available for this feature:
EST sequence >FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bpback to top |