FC931799

Overview
NameFC931799
Unique NameFC931799
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_METS5 (30S ribosomal protein S3P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps3p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.584e-18
Identity = 55/177 (31.07%), Postives = 92/177 (51.98%), Query Frame = 3
Query:  129 KRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            K+ F+   +    ++E L +E     Y+G E+  TPM T + I A R   ++G+ G+ I+ L  +++K F     + ++   +     L A   A  L   L  G   RRA +  +R IM +GA G EVIVSGK+ ++RAK  K K+G +  +G  ++  +D A+    L+ G+ G+
Sbjct:    5 KKYFLQKSMTRVMVDEFLAKEYYNAEYAGSEISKTPMGTRVTIYAGRPAIIIGKDGKTIKRLAQILEKYFNL--ENPQITVTQPEKPELNARVMAFRLAVTLEKGYHFRRAAFMTIRRIMNAGALGAEVIVSGKITSERAKFEKLKEGIVYKTGNNLDVMVDRAIAIATLKMGIYGV 179          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_STAMF (30S ribosomal protein S3P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps3p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 55/164 (33.54%), Postives = 89/164 (54.27%), Query Frame = 3
Query:  168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            L+E L     + GY+G+E+  TP    ++I A     ++G  G  IR+L +++Q  F     +V +    V +  L A   A  +   L   +  RR    +LR +ME+GA G E+I+SGKLR++RA+  K K G +  +G  V+  +D AV + LL++GV G+
Sbjct:   20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL--ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISGKLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGV 181          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRCJ (30S ribosomal protein S3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps3p PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.187e-17
Identity = 53/168 (31.55%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            + E L   LA+ GY   E+  TP+ T I+I A R   ++G KG  ++E++S++  +       +++    K+    L     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RAK  K   G +   G      +  AV  VLL+ G+ GI  R
Sbjct:   24 IKEFLEYRLAKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSSILANKLGVENPQIDVIDVSKIEAPELFPKVVAYRIANAMARGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERAKFEKITYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PICTO (30S ribosomal protein S3P OS=Picrophilus torridus GN=rps3p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.419e-16
Identity = 50/181 (27.62%), Postives = 93/181 (51.38%), Query Frame = 3
Query:  126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            K+++FV D +    ++E L +E    G+ G+E++ TP  T I +   R   V+G  G +I+E+T  ++KRF      +E+  ++VN   L     ++ +   L  G   R+A    LR +++  A G  + + GK+  +RA++ KF  G +  SG+P    ++       L+ G++G+  R
Sbjct:    2 KEKRFVNDNIKRLLVSEYLRKENDNAGFGGMEMKRTPYGTNITLYVNRPGLVIGRHGTKIKEMTETLEKRFAIESPQIEV--KEVNTPDLNPQIASKKIALSLEKGWNYRKAGNTSLRKMIDLNAPGVLIRIGGKISGERARAQKFMFGKIKYSGEPARSGVEYGFSEAKLKTGIIGVSVR 180          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRIL (30S ribosomal protein S3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps3p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.388e-16
Identity = 49/168 (29.17%), Postives = 87/168 (51.79%), Query Frame = 3
Query:  168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            + E L  +L++ GY   E+  TP+ T I+I A R   ++G+KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV  VLL+ G+ GI  R
Sbjct:   24 IKEFLEYKLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGKKGVIVKEISNILVNKLGVENPQIDVIDVSKIEAPEMFPKVIAYRIANAMAKGVRFRRVMFVAVRQLMEAGAKGFEIVVSGKLSTERARFEKLTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRAE (30S ribosomal protein S3P OS=Pyrobaculum aerophilum GN=rps3p PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 49/168 (29.17%), Postives = 85/168 (50.60%), Query Frame = 3
Query:  168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R +ME+GAKG E++VSGKL  +RA+  K   G +   G      +  AV  VLL+ G+ GI  R
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVENPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVSGKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_PYRAR (30S ribosomal protein S3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps3p PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 3
Query:  168 LNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELY-AEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            + E L   L++ GY   E+  TP+ T I+I A R   ++G KG  ++E+++++  +       +++    K+    +     A  +   +  G+  RR  +  +R + E+GAKG E++VSGKL  +RA+  K   G +   G      +  AV  VLL+ G+ GI  R
Sbjct:   24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEVSNILATKLGVENPQIDVIDVSKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFAAIRQLTEAGAKGFEIVVSGKLSTERARFEKQTFGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVR 191          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_CENSY (30S ribosomal protein S3P OS=Cenarchaeum symbiosum GN=rps3p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 53/169 (31.36%), Postives = 81/169 (47.93%), Query Frame = 3
Query:  165 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIME-SGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGIRXR 668
            +L E L   + + G+SGVEV   P  T+I +  TR   V+G KG  IRELT  ++K F      V++  +++    L        +   +  G A RRA    ++ IME   A G ++ +SGKLR  R+   K   G +  +G   +  +   V  V    G++GIR R
Sbjct:   16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDLKSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITISGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIR 182          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_THEVO (30S ribosomal protein S3P OS=Thermoplasma volcanium GN=rps3p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 47/178 (26.40%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            K+RKFV + V    + E L +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L+  +++GA+G  + +SGK+  +RA+  KF  G +  SG+P ++ +        L+ G+LG+
Sbjct:    2 KERKFVNEAVKRLLVYEYLVKETENAGFGKMSMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTETLEKKYAIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLKRTIDAGARGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMLVGFSTAKLKVGILGV 177          
BLAST of FC931799 vs. ExPASy Swiss-Prot
Match: RS3_THEAC (30S ribosomal protein S3P OS=Thermoplasma acidophilum GN=rps3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 46/178 (25.84%), Postives = 93/178 (52.25%), Query Frame = 3
Query:  126 KKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMVSSGQPVNEYIDSAVRRVLLRQGVLGI 659
            K+RKF+ + V    + E + +E    G+  + ++ TP  T I +   R   V+G +G +++++T  ++K++      +E+  + V +  L     A+ +   L  G + R+A    L   +++GAKG  + +SGK+  +RA+  KF  G +  SG+P ++ + +      L+ G+LG+
Sbjct:    2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETPQIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKISGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGV 177          
The following BLAST results are available for this feature:
BLAST of FC931799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS3_METS52.584e-1831.0730S ribosomal protein S3P OS=Metallosphaera sedula... [more]
RS3_STAMF9.819e-1833.5430S ribosomal protein S3P OS=Staphylothermus marin... [more]
RS3_PYRCJ2.187e-1731.5530S ribosomal protein S3P OS=Pyrobaculum calidifon... [more]
RS3_PICTO2.419e-1627.6230S ribosomal protein S3P OS=Picrophilus torridus ... [more]
RS3_PYRIL5.388e-1629.1730S ribosomal protein S3P OS=Pyrobaculum islandicu... [more]
RS3_PYRAE9.190e-1629.1730S ribosomal protein S3P OS=Pyrobaculum aerophilu... [more]
RS3_PYRAR2.047e-1528.5730S ribosomal protein S3P OS=Pyrobaculum arsenatic... [more]
RS3_CENSY8.602e-1431.3630S ribosomal protein S3P OS=Cenarchaeum symbiosum... [more]
RS3_THEVO1.467e-1326.4030S ribosomal protein S3P OS=Thermoplasma volcaniu... [more]
RS3_THEAC1.916e-1325.8430S ribosomal protein S3P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC34201C11EF PostHarveN Citrus clementina cDNA clone C34201C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931799 ID=FC931799; Name=FC931799; organism=Citrus clementina; type=EST; length=726bp
GCTTCTAACACTAAACCTAGGGTTTGCAGAGAGCTAGCTGCGCACACAAG
CCACCTCATTGAGATCATCAGATCCCTAACTGTGTAATCGAACCAACAGA
AAGCAAAATGGCAACTCAAATCAGCAAGAAAAGAAAGTTCGTGGCTGATG
GCGTGTTTTTCGCGGAGCTTAACGAGGTACTGACTAGAGAGCTTGCGGAG
GACGGTTATTCTGGAGTAGAGGTCAGGGTAACTCCCATGCGTACTGAGAT
CATCATCCGAGCCACTCGCACTCAGAACGTTCTTGGTGAGAAAGGGAGGA
GAATTAGAGAGCTGACATCAGTGGTGCAGAAAAGGTTCAAATTCCCGGAG
AATAGCGTGGAGCTGTACGCTGAGAAAGTCAACAATAGAGGACTATGTGC
CATTGCTCAAGCCGAGTCTCTTCGCTACAAGCTCCTTGGTGGGCTTGCTG
TTCGCAGGGCTTGCTATGGTGTCTTGAGGTTCATTATGGAAAGTGGAGCC
AAGGGATGTGAGGTCATTGTCAGTGGAAAGTTGAGGGCACAACGTGCAAA
ATCAATGAAGTTTAAGGATGGATATATGGTCTCTTCTGGTCAGCCAGTGA
ATGAATATATTGACTCTGCTGTGAGACGTGTTCTTTTGAGACAGGGTGTA
CTTGGTATTAGGTNCAGATCATGCTTAGTTGGGATCCTAAATGGAAGCAG
GTCCTACTACCCCTCTACCTGATCTC
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