FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13225 contig Ccv1_Contig13225:20..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACB_DICDI (Rho-related protein racB OS=Dictyostelium discoideum GN=racB PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.541e-56
Identity = 109/173 (63.01%), Postives = 132/173 (76.30%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IK V VGDGAVGKTC+LISYTSN+FPT+YVPTVFDN+SANV+VD  TV+LGLWDTAGQEDY+RLRPLSY   DVFL+ F++IS+ SY NV  KW PE+ H+ P   +ILVGTK DLR+DK+ L         P+T  QGE++ K I A  Y+ECS+ TQ+ +K VFD AIK V
Sbjct:    4 IKLVVVGDGAVGKTCLLISYTSNSFPTEYVPTVFDNYSANVMVDNKTVSLGLWDTAGQEDYDRLRPLSYPQTDVFLICFAIISQTSYTNVKSKWWPEVTHHCPNCTIILVGTKCDLREDKESLEKLREKHQQPLTFQQGEQMAKEIKAFCYMECSALTQKGLKQVFDEAIKAV 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC1C_DICDI (Rho-related protein rac1C OS=Dictyostelium discoideum GN=rac1C PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 1.541e-56
Identity = 108/173 (62.43%), Postives = 133/173 (76.88%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDK--QFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS +SYENV+ KW PE+ H+AP VP+ILVGTK+D+R+DK  Q         P++  QG    K I A  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPINLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIISPSSYENVSGKWGPEVFHHAPNVPIILVGTKMDMREDKETQDRLKEKKLYPVSYEQGLLKMKEINAFKYLECSALTQKGLKTVFDEAIRSV 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 9.986e-56
Identity = 105/175 (60.00%), Postives = 133/175 (76.00%), Query Frame = 1
Query:  136 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            R +K V VGDGAVGKTCMLISYT+N FP +Y+PTVF+N+++++VVD   +NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS+I+ ASYENV  KW PE+  + P VP+ILVGTK+D+RDD + +        VPI   QG+EL K IGA  YIECS+ TQ N+K VF+ A++ V
Sbjct:    2 RPVKLVIVGDGAVGKTCMLISYTTNAFPNEYIPTVFENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRLAEKNIVPIQPPQGDELAKKIGAVKYIECSALTQANLKLVFEEAVRAV 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.454e-55
Identity = 104/179 (58.10%), Postives = 128/179 (71.51%), Query Frame = 1
Query:  124 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            MSA+  IK V +GDGAVGKTC+LISY +N FP DY+PTVFDN+  N+      + LGLWDTAGQE+Y++LRPLSY  A+VFL+ FS+ +  S+ENV  KW PE+ H+ P VP ILVGTKLD RDD+  L      G  PITT QG +L + I A  Y+ECS+KT QN+K VFD AIK V
Sbjct:    1 MSAAEVIKLVVIGDGAVGKTCLLISYANNRFPEDYIPTVFDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVFDEAIKSV 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC1_CAEEL (Ras-related protein ced-10 OS=Caenorhabditis elegans GN=ced-10 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 8.454e-55
Identity = 103/173 (59.54%), Postives = 129/173 (74.57%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IKCV VGDGAVGKTC+LISYT+N FP +Y+PTVFDN+SANV+VDG  +NLGLWDTAGQEDY+RLRPLSY   DVFL+ F+L + AS+ENV  KW PE+ H+ P  P+ILVGTK DLR+D+  +         P++  QG  + K I A  Y+ECS+ TQ+ +K VFD AI+ V
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGRPINLGLWDTAGQEDYDRLRPLSYPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTVERLRERRLQPVSQTQGYVMAKEIKAVKYLECSALTQRGLKQVFDEAIRAV 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_SCHPO (Cell division control protein 42 homolog OS=Schizosaccharomyces pombe GN=cdc42 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.157e-54
Identity = 103/171 (60.23%), Postives = 130/171 (76.02%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDD---KQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP+DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+ S AS+ENV +KW PE+ H+ PGVP ++VGT++DLRDD   +Q LA  H   P+T  QGE L + +GA  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRDDPSVQQKLARQH-QHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_CANAL (Cell division control protein 42 homolog OS=Candida albicans GN=CDC42 PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.082e-53
Identity = 102/170 (60.00%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHH--GAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT++ FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+IS AS+ENV +KW PE+ H+ PGVP+I+VGT+ DLR+D   L   H     PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTSKFPADYVPTVFDNYAVTVMIGDEPFTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPASFENVKEKWFPEVHHHCPGVPIIIVGTQTDLRNDDVILQRLHRQKLSPITQEQGEKLAKELRAVKYVECSALTQRGLKTVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_YEAST (Cell division control protein 42 OS=Saccharomyces cerevisiae GN=CDC42 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.763e-52
Identity = 98/170 (57.65%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKTC+LISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+IS  S+ENV +KW PE+ H+ PGVP ++VGT++DLRDDK  +         PIT+ QG  L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVISPPSFENVKEKWFPEVHHHCPGVPCLVVGTQIDLRDDKVIIEKLQRQRLRPITSEQGSRLARELKAVKYVECSALTQRGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOQ_HUMAN (Rho-related GTP-binding protein RhoQ OS=Homo sapiens GN=RHOQ PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52
Identity = 96/170 (56.47%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLA--DHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     PI   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOQ_RAT (Rho-related GTP-binding protein RhoQ OS=Rattus norvegicus GN=Rhoq PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.143e-51
Identity = 95/170 (55.88%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLA--DHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RACB_DICDI1.541e-5663.01Rho-related protein racB OS=Dictyostelium discoide... [more]
RAC1C_DICDI1.541e-5662.43Rho-related protein rac1C OS=Dictyostelium discoid... [more]
RECG_ENTHI9.986e-5660.00Rho-related protein racG OS=Entamoeba histolytica ... [more]
RACC_DICDI8.454e-5558.10Rho-related protein racC OS=Dictyostelium discoide... [more]
RAC1_CAEEL8.454e-5559.54Ras-related protein ced-10 OS=Caenorhabditis elega... [more]
CDC42_SCHPO7.157e-5460.23Cell division control protein 42 homolog OS=Schizo... [more]
CDC42_CANAL2.082e-5360.00Cell division control protein 42 homolog OS=Candid... [more]
CDC42_YEAST1.763e-5257.65Cell division control protein 42 OS=Saccharomyces ... [more]
RHOQ_HUMAN8.748e-5256.47Rho-related GTP-binding protein RhoQ OS=Homo sapie... [more]
RHOQ_RAT1.143e-5155.88Rho-related GTP-binding protein RhoQ OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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