FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13225 contig Ccv1_Contig13225:20..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOQ_MOUSE (Rho-related GTP-binding protein RhoQ OS=Mus musculus GN=Rhoq PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.143e-51
Identity = 95/170 (55.88%), Postives = 130/170 (76.47%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLA--DHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++ +V V G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS+++ AS++NV ++W+PEL+ YAP VP +L+GT++DLRDD + LA  +     P+   QG++L K IGA  Y+ECS+ TQ+ +K VFD AI
Sbjct:   10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPVCVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_AEDAE (Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.143e-51
Identity = 97/170 (57.06%), Postives = 128/170 (75.29%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD++  L     +   PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDEQSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 98/173 (56.65%), Postives = 123/173 (71.10%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IK V VGDGAVGKTC+LI YT+N FP DY+PTVFDN+  ++      + L LWDTAGQE+Y++LRPLSY  A +FL+ FS+ S  SY+NV  KW PE+ H+AP VP+ILVGTKLD R+D   +      G   I TA+GEEL+  I A  YIECS+KT +N+K VFD A+K V
Sbjct:    8 IKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTVFDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLTEQGMTVINTAKGEELKNRIKAVKYIECSAKTSENLKTVFDEAVKTV 180          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_DROME (Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 97/170 (57.06%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L     +   PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_ASHGO (Cell division control protein 42 OS=Ashbya gossypii GN=CDC42 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 95/170 (55.88%), Postives = 125/170 (73.53%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKTC+LISYT+N FP DYVPTVFDN++  V++      LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S  S+ENV +KW PE+ H+ PGVP ++VGT++DLR++K  +         PIT  QGE+  + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 LKCVVVGDGAVGKTCLLISYTTNQFPADYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDYDRLRPLSYPSTDVFLVCFSVVSPPSFENVKEKWFPEVHHHCPGVPCLIVGTQIDLRENKMVIEKLQRQRLRPITPEQGEKFARELRAVKYVECSALTQRGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_ANOGA (Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 97/170 (57.06%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L     +   PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDENSTLEKLAKNKQKPITLEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_DROPS (Cdc42 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Cdc42 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 97/170 (57.06%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+    P +LVGT++DLRD+   L     +   PIT  QGE+L K + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCQKTPFLLVGTQIDLRDETSTLEKLAKNKQKPITMEQGEKLAKELKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACF1_DICDI (Rho-related protein racF1 OS=Dictyostelium discoideum GN=racF1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 102/175 (58.29%), Postives = 131/175 (74.86%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDD----KQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IKCV VGDGAVGKTCMLISYT+N FP++Y+PTVFDN+ AN++++G   +LGLWDTAGQEDY+RLRPLSY   DVFL+ FS+IS+AS+ENV  KW  E+ H+APGVP+ILVGTK D+R+D    K+    +   VP    +G E  K I A +Y+E S+ TQ+ +K VFD  I+ V
Sbjct:    4 IKCVVVGDGAVGKTCMLISYTTNGFPSEYIPTVFDNYCANLMLEGKPYSLGLWDTAGQEDYDRLRPLSYPHTDVFLICFSIISQASFENVTTKWFKEVNHHAPGVPIILVGTKQDIRNDNDSIKKLKEKNIELVPY--EKGLEKAKEINA-IYLEASALTQRGIKDVFDQCIRSV 175          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOJ_HUMAN (Rho-related GTP-binding protein RhoJ OS=Homo sapiens GN=RHOJ PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 97/184 (52.72%), Postives = 130/184 (70.65%), Query Frame = 1
Query:  109 CTWREMSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            C  R     + +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVFL+ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD + LA   +    P+T   G +L K IGA  Y+ECS+ TQ+ +KAVFD AI  +
Sbjct:   11 CGCRGNDEKKMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 194          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOJ_MOUSE (Rho-related GTP-binding protein RhoJ OS=Mus musculus GN=Rhoj PE=1 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 5.670e-51
Identity = 96/176 (54.55%), Postives = 129/176 (73.30%), Query Frame = 1
Query:  133 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            +R +KCV VGDGAVGKTC+L+SY ++ FP +YVPTVFD+++  V V G    LGL+DTAGQEDYN+LRPLSY   DVFL+ FS+++ ASY NV ++W+PEL+   P VP +L+GT++DLRDD + LA   +    P+T   G +L K IGA  Y+ECS+ TQ+ +KAVFD AI  +
Sbjct:   19 NRILKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVTVTVGGKQHLLGLYDTAGQEDYNQLRPLSYPNTDVFLICFSVVNPASYHNVQEEWVPELKDCMPHVPYVLIGTQIDLRDDPKTLARLLYMKEKPLTYEHGVKLAKAIGAQCYLECSALTQKGLKAVFDEAILTI 194          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOQ_MOUSE1.143e-5155.88Rho-related GTP-binding protein RhoQ OS=Mus muscul... [more]
CDC42_AEDAE1.143e-5157.06Cdc42 homolog OS=Aedes aegypti GN=Cdc42 PE=3 SV=1[more]
RACC_ENTHI1.492e-5156.65Rho-related protein racC OS=Entamoeba histolytica ... [more]
CDC42_DROME1.492e-5157.06Cdc42 homolog OS=Drosophila melanogaster GN=Cdc42 ... [more]
CDC42_ASHGO1.492e-5155.88Cell division control protein 42 OS=Ashbya gossypi... [more]
CDC42_ANOGA1.492e-5157.06Cdc42 homolog OS=Anopheles gambiae GN=Cdc42 PE=2 S... [more]
CDC42_DROPS1.949e-5157.06Cdc42 homolog OS=Drosophila pseudoobscura pseudoob... [more]
RACF1_DICDI3.324e-5158.29Rho-related protein racF1 OS=Dictyostelium discoid... [more]
RHOJ_HUMAN4.342e-5152.72Rho-related GTP-binding protein RhoJ OS=Homo sapie... [more]
RHOJ_MOUSE5.670e-5154.55Rho-related GTP-binding protein RhoJ OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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