FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_CHICK (Cell division control protein 42 homolog OS=Gallus gallus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 95/170 (55.88%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +     +   PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_CANFA (Cell division control protein 42 homolog OS=Canis familiaris GN=CDC42 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 95/170 (55.88%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +     +   PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_BOVIN (Cell division control protein 42 homolog OS=Bos taurus GN=CDC42 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 95/170 (55.88%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVFDN++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +     +   PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: CDC42_MACFA (Cell division control protein 42 homolog OS=Macaca fascicularis GN=CDC42 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.675e-50
Identity = 94/170 (55.29%), Postives = 126/170 (74.12%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGKTC+LISYT+N FP++YVPTVF+N++  V++ G    LGL+DTAGQEDY+RLRPLSY   DVFL+ FS++S +S+ENV +KW+PE+ H+ P  P +LVGT++DLRDD   +     +   PIT    E+L + + A  Y+ECS+ TQ+ +K VFD AI
Sbjct:    4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFNNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAI 173          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACB_ENTHI (Rho-related protein racB (Fragment) OS=Entamoeba histolytica GN=RACB PE=3 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 4.800e-50
Identity = 94/163 (57.67%), Postives = 121/163 (74.23%), Query Frame = 1
Query:  160 GDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 642
            G G VGKTC+L+SYT+N FPT+YVPTVFDN+SA V+VD   +NLGLWDTAGQEDY+R+RPLSY   DVFLL FS++S  S+EN++ KW PE+ H+ P  P +L+GTK+D+RD++            PIT+ QGE   K IGA  YIECS+ TQ+N++ VFD A
Sbjct:    1 GAGGVGKTCLLVSYTTNAFPTEYVPTVFDNYSATVMVDSRPINLGLWDTAGQEDYDRIRPLSYPQTDVFLLCFSVVSPPSFENISSKWKPEVSHHCPNAPCLLIGTKIDIRDEQTQTNKTCDKKIEPITSEQGEAKCKDIGALKYIECSALTQKNLRYVFDEA 163          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACA_DICDI (Rho-related protein racA OS=Dictyostelium discoideum GN=racA PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.064e-49
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHG--AVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            IK V VGDGAVGK+C+LI+YT+N FP +YVPTVFDN+SANV++DG   NLGLWDTAGQEDY+RLRPLSY   DVFL+ FS++S+AS+EN+  KW PE+ H+AP +P++LVGTK DLR        HH      ++ A+   L + +G   Y+E S+  Q N++ +F  AI+
Sbjct:    4 IKLVVVGDGAVGKSCLLIAYTTNAFPGEYVPTVFDNYSANVMIDGKPFNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSIVSRASFENIRAKWYPEILHHAPNIPIVLVGTKNDLR-------GHHDLKRPEVSAAEANNLVRELGFSGYVETSALLQTNLRELFSLAIR 167          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RAC2_CAEEL (Ras-related protein rac-2 OS=Caenorhabditis elegans GN=rac-2 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 92/171 (53.80%), Postives = 121/171 (70.76%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            IKCV VGDGAVGKTC+L+SYT+N FP +Y+ TVFD +S NV+VDG  +NL LWDTAGQ+DY++ R LS+   DVFL+ F+L + AS+ENV  KW PE+ H+ P  P+ILVGTK DLR+D+  +         P++  QG  + K I A  Y+ECS+ TQ  +K VFD AI+
Sbjct:    4 IKCVVVGDGAVGKTCLLLSYTTNAFPGEYILTVFDTYSTNVMVDGRPINLSLWDTAGQDDYDQFRHLSFPQTDVFLVCFALNNPASFENVRAKWYPEVSHHCPNTPIILVGTKADLREDRDTIERLRERRLQPVSHTQGYVMAKEIKAVKYLECSALTQIGLKQVFDEAIR 174          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACE_DICDI (Rho-related protein racE OS=Dictyostelium discoideum GN=racE PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.707e-47
Identity = 94/176 (53.41%), Postives = 121/176 (68.75%), Query Frame = 1
Query:  127 SASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            S +  +K V VGDGAVGKTC+LI Y  N FP DYVPTVF+N++A        + + LWDTAGQE+Y+RLRPLSY GADV LL FS IS++SYE +  KW PE+ HY P VP ILVGTK+DLR+ +    +     PIT   G  ++K I A  Y+E S+KT+Q ++ VF AAI++V
Sbjct:    7 SGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEIV 182          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOL_DROME (Ras-like GTP-binding protein RhoL OS=Drosophila melanogaster GN=RhoL PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.968e-47
Identity = 92/175 (52.57%), Postives = 124/175 (70.86%), Query Frame = 1
Query:  136 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLR--DDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            R +K   VGDG VGKTCMLI+YT N FP +Y+PTVFDN + N+ VD    NL LWDTAGQEDY RLRPLSY   + FLL +S+ S+ S+ENV  KW PE+RH++  VP++LVGTKLDLR  + ++F         +TT +G+++RK I A   +ECS+K +QN++ VF+ A++ V
Sbjct:   10 RPLKITIVGDGMVGKTCMLITYTRNEFPEEYIPTVFDNHACNIAVDDRDYNLTLWDTAGQEDYERLRPLSYPSTNCFLLCYSISSRTSFENVKSKWWPEIRHFSAHVPVVLVGTKLDLRIPNSEKF---------VTTQEGKKMRKEIHAFNLVECSAKKKQNLQQVFEEAVRAV 175          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOU_HUMAN (Rho-related GTP-binding protein RhoU OS=Homo sapiens GN=RHOU PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.888e-46
Identity = 91/172 (52.91%), Postives = 125/172 (72.67%), Query Frame = 1
Query:  136 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+FLL FS++S +S++NV++KW+PE+R + P  P+ILVGT+ DLR+D + L   D     P+     +   + I A  YIECS+ TQ+N+K VFDAAI
Sbjct:   48 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEIKAASYIECSALTQKNLKEVFDAAI 219          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDC42_CHICK9.672e-5155.88Cell division control protein 42 homolog OS=Gallus... [more]
CDC42_CANFA9.672e-5155.88Cell division control protein 42 homolog OS=Canis ... [more]
CDC42_BOVIN9.672e-5155.88Cell division control protein 42 homolog OS=Bos ta... [more]
CDC42_MACFA3.675e-5055.29Cell division control protein 42 homolog OS=Macaca... [more]
RACB_ENTHI4.800e-5057.67Rho-related protein racB (Fragment) OS=Entamoeba h... [more]
RACA_DICDI4.064e-4954.39Rho-related protein racA OS=Dictyostelium discoide... [more]
RAC2_CAEEL7.664e-4853.80Ras-related protein rac-2 OS=Caenorhabditis elegan... [more]
RACE_DICDI1.707e-4753.41Rho-related protein racE OS=Dictyostelium discoide... [more]
RHOL_DROME4.968e-4752.57Ras-like GTP-binding protein RhoL OS=Drosophila me... [more]
RHOU_HUMAN1.888e-4652.91Rho-related GTP-binding protein RhoU OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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