FC931803

Overview
NameFC931803
Unique NameFC931803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13225 contig Ccv1_Contig13225:20..673. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOU_MOUSE (Rho-related GTP-binding protein RhoU OS=Mus musculus GN=Rhou PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.465e-46
Identity = 90/172 (52.33%), Postives = 123/172 (71.51%), Query Frame = 1
Query:  136 RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            R +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y   D+FLL FS++S  S++NV +KW+PE+R + P  P+ILVGT+ DLR+D + L   D     P+     +   + + A  YIECS+ TQ+N+K VFDAAI
Sbjct:   51 RGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPTSFQNVGEKWVPEIRRHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLCAEEVKAVSYIECSALTQKNLKEVFDAAI 222          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOU_BOVIN (Rho-related GTP-binding protein RhoU OS=Bos taurus GN=RHOU PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.205e-46
Identity = 90/170 (52.94%), Postives = 123/170 (72.35%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            +KCV VGDGAVGKT +++SYT+N +PT+Y+PT FDNFSA V VDG  V L L DTAGQ+++++LRPL Y  AD+FLL FS++  +S++NV++KW+PE+R + P  P+ILVGT+ DLR+D + L   D     P+         + I A  YIECS+ TQ+N+K VFDAAI
Sbjct:   47 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVKLQLCDTAGQDEFDKLRPLCYTNADIFLLCFSVVGPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAARLCAEEIKATSYIECSALTQKNLKEVFDAAI 216          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RACH_DICDI (Rho-related protein racH OS=Dictyostelium discoideum GN=racH PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 7.173e-46
Identity = 94/172 (54.65%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGV-PMILVGTKLDLRDDKQFLADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIKVV 654
            IK + VGD +VGKTC+LISYT+N+FP +YVPTVFDN++AN +V+ + +NLGLWDTAG E+YN  RPLSY G DVF++ FSLIS+ S+ENV KKW PE+      V P+ILVGTKLDLR   +          +T   GE++R  IGA  Y ECS+ TQ  +  VF+ A +VV
Sbjct:    5 IKVMVVGDMSVGKTCLLISYTTNSFPGEYVPTVFDNYNANAIVNNTPINLGLWDTAGSEEYNSFRPLSYPGTDVFIICFSLISQTSFENVIKKWHPEIIQNMEQVPPIILVGTKLDLRGKGK-----SEEKEVTPEMGEQMRAAIGAYKYSECSALTQDGLTTVFEEAGRVV 171          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOA_EMENI (GTP-binding protein rhoA OS=Emericella nidulans GN=rhoA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 9.368e-46
Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLADHH--GAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  + V L+ F++ S  S +NV +KWI E+ H+  G+P+ILVG K DLR D + + + +     P+T  QGEE+RK IGA  Y+ECS++T + V+ VF+AA +
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGKHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCQGLPIILVGCKKDLRHDPKTIEELNKTSQKPVTPEQGEEVRKKIGAYKYLECSARTNEGVREVFEAATR 176          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHO1_CANAL (GTP-binding protein RHO1 OS=Candida albicans GN=RHO1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.726e-45
Identity = 90/170 (52.94%), Postives = 121/170 (71.18%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL--ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V VGDGA GKTC+LI ++  TFP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ FS+ S  S +NV +KWI E+ H+  GVP+ILVG K DLRDD   +         P++T++G+++ + IGA  Y+ECS+KT + V+ VF+AA +
Sbjct:   11 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRKVELALWDTAGQEDYDRLRPLSYPDSNVILICFSVDSPDSLDNVLEKWISEVLHFCQGVPIILVGCKSDLRDDPHTIEALRQQQQQPVSTSEGQQVAQRIGAADYLECSAKTGRGVREVFEAATR 180          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHO1_CAEEL (Ras-like GTP-binding protein rhoA OS=Caenorhabditis elegans GN=rho-1 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.649e-45
Identity = 88/168 (52.38%), Postives = 115/168 (68.45%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAA 642
            K V VGDGA GKTC+LI ++ + FP  YVPTVF+N+ A++ VDG  V L LWDTAGQEDY+RLRPLSY   DV L+ FS+ S  S EN+ +KW PE+RH+ P VP+ILVG K DLR D Q + +       P+   QG  + + IGA  Y+ECS+KT+  ++ VF+ A
Sbjct:    7 KLVIVGDGACGKTCLLIVFSKDQFPDVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVRHFCPNVPIILVGNKRDLRSDPQTVRELAKMKQEPVKPEQGRAIAEQIGAFAYLECSAKTKDGIREVFEKA 174          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHO1_KLULA (GTP-binding protein Rho1 OS=Kluyveromyces lactis GN=RHO1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.931e-45
Identity = 92/170 (54.12%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V VGDGA GKTC+LI +    FP  YVPTVFDN+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ +S+    S ENV +KWI E+ H+  GVP+ILVG K DLR+D Q + +    G  P++ AQ +E+   IGA  YIECS+KT   V+ VF+AA +
Sbjct:   14 KLVIVGDGACGKTCLLIVFAKGKFPQVYVPTVFDNYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICYSIDLPDSLENVMEKWISEVLHFCQGVPIILVGCKADLRNDPQVVEELRAQGLQPVSQAQAQEVADQIGAVDYIECSAKTGYGVREVFEAATR 183          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.767e-44
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 1
Query:  145 KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFLAD--HHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAIK 648
            K V VGDGA GKTC+LI ++   FP  YVPTVF+N+ A+V VDG  V L LWDTAGQEDY+RLRPLSY  ++V L+ FS+    S ENV +KWI E+ H+  GVP+ILVG K+DLR+D Q +      G  P+T+ +G+ +   IGA  Y ECS+KT   V+ VF+AA +
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOV_RAT (Rho-related GTP-binding protein RhoV OS=Rattus norvegicus GN=Rhov PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.308e-44
Identity = 89/173 (51.45%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL-----ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGK+ +++SYT N +P+ Y PT  D FS  V+VDG+ V + LWDTAGQED++RLR L Y   DVFL  FS++  +S++N+ +KW+PE+R + P  P++LVGT+ DLRDD   L         G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPSRYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPEPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
BLAST of FC931803 vs. ExPASy Swiss-Prot
Match: RHOV_MOUSE (Rho-related GTP-binding protein RhoV OS=Mus musculus GN=Rhov PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.014e-44
Identity = 89/173 (51.45%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  142 IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVAKKWIPELRHYAPGVPMILVGTKLDLRDDKQFL-----ADHHGAVPITTAQGEELRKLIGAPVYIECSSKTQQNVKAVFDAAI 645
            IKCV VGDGAVGK+ +++SYT N +P  Y PT  D FS  V+VDG+ V + LWDTAGQED++RLR L Y   DVFL  FS++  +S++N+ +KW+PE+R + P  P++LVGT+ DLRDD   L         G VP   AQG  L + I A  Y+ECS+ TQ+N+K VFD+AI
Sbjct:   32 IKCVLVGDGAVGKSSLIVSYTCNGYPARYRPTALDTFSVQVLVDGAPVRIELWDTAGQEDFDRLRSLCYPDTDVFLACFSVVQPSSFQNITEKWLPEIRTHNPQAPVLLVGTQADLRDDVNVLIQLDQGGREGPVPQPQAQG--LAEKIRACCYLECSALTQKNLKEVFDSAI 202          
The following BLAST results are available for this feature:
BLAST of FC931803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RHOU_MOUSE2.465e-4652.33Rho-related GTP-binding protein RhoU OS=Mus muscul... [more]
RHOU_BOVIN4.205e-4652.94Rho-related GTP-binding protein RhoU OS=Bos taurus... [more]
RACH_DICDI7.173e-4654.65Rho-related protein racH OS=Dictyostelium discoide... [more]
RHOA_EMENI9.368e-4653.53GTP-binding protein rhoA OS=Emericella nidulans GN... [more]
RHO1_CANAL2.726e-4552.94GTP-binding protein RHO1 OS=Candida albicans GN=RH... [more]
RHO1_CAEEL4.649e-4552.38Ras-like GTP-binding protein rhoA OS=Caenorhabditi... [more]
RHO1_KLULA7.931e-4554.12GTP-binding protein Rho1 OS=Kluyveromyces lactis G... [more]
RHO1_YEAST1.767e-4452.94GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RHOV_RAT2.308e-4451.45Rho-related GTP-binding protein RhoV OS=Rattus nor... [more]
RHOV_MOUSE3.014e-4451.45Rho-related GTP-binding protein RhoV OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionC34201D03EF PostHarveN Citrus clementina cDNA clone C34201D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931803 ID=FC931803; Name=FC931803; organism=Citrus clementina; type=EST; length=654bp
CTATCCTTTGTCTGTCTCTGCTCTTACAAAAATGCCGCACTTGTTCTGAG
TTAGGGTTCTGTAGCTGTAAAAACAAAGAAAGACGAGTAACACAGAGGCT
GTCTCAAGTGCACGTGGCGCGAGATGAGTGCGTCGAGGTTCATAAAGTGC
GTGACGGTCGGTGACGGCGCCGTCGGCAAGACTTGCATGCTCATTTCTTA
CACCAGCAACACTTTCCCGACGGATTATGTGCCAACAGTATTTGACAATT
TCAGTGCAAATGTGGTAGTGGATGGAAGCACTGTTAATCTTGGGTTGTGG
GACACTGCAGGCCAGGAAGATTACAATAGACTAAGGCCATTGAGCTACCG
TGGGGCAGATGTCTTCTTACTCGCATTCTCTCTCATTAGCAAGGCCAGCT
ATGAAAATGTTGCTAAGAAATGGATTCCTGAGTTGAGGCATTATGCACCT
GGTGTTCCAATGATTCTTGTCGGGACGAAGCTCGATCTTCGGGATGATAA
GCAGTTCCTTGCAGATCACCATGGTGCAGTGCCAATTACCACGGCCCAAG
GGGAGGAATTGAGAAAGTTGATAGGTGCTCCTGTTTACATCGAGTGTAGT
TCCAAGACACAACAGAATGTGAAAGCTGTCTTTGATGCAGCCATCAAGGT
GGTT
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