FC931815

Overview
NameFC931815
Unique NameFC931815
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931815_ssr13 microsatellite FC931815_ssr13:13..26. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10254 contig Ccv1_Contig10254:1..691. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_OCHA4 (Adenosylhomocysteinase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.289e-44
Identity = 89/145 (61.38%), Postives = 106/145 (73.10%), Query Frame = 3
Query:  156 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAE 590
            + ++F VKDLS AD+GR E+++AE EMPGLMA R EFG SQP KGA+I+GSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGETL+EYW  T++   W  G   ++I+DDGGDAT+ I  GA+AE
Sbjct:    3 ASQDFVVKDLSLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLQALGAEVRWASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWTYTDQIFQWPDGEPSNMILDDGGDATMYILIGARAE 147          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_RALEH (Adenosylhomocysteinase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAEE 593
            +++ V D++ A +GR EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQDH              +KGE+L+EYW  T +  DW  GG P++I+DDGGDATLL+H GA+AE+
Sbjct:    9 QDYLVADINLAGWGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAAGGTPVFAFKGESLKEYWDFTHRIFDWADGGTPNMILDDGGDATLLLHLGARAEK 152          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_METNO (Adenosylhomocysteinase OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 86/145 (59.31%), Postives = 103/145 (71.03%), Query Frame = 3
Query:  156 SGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAE 590
            S +++ V+D+  ADFGR EI +AE EMPGLMA R E+  SQP KGAKI GSLHMTIQTAVLIETL ALGA++RW SCNI+STQDH               KGETL EYW  T K  +W  GG P++I+DDGGDAT+ +H G +AE
Sbjct:    3 SAQDYIVRDIGLADFGRKEIAIAETEMPGLMAVRREYAASQPLKGAKIAGSLHMTIQTAVLIETLKALGADIRWVSCNIYSTQDHAAAAIAAAGIPVFAVKGETLTEYWDYTAKLFEWHDGGMPNMILDDGGDATMFVHAGLRAE 147          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_CUPTR (Adenosylhomocysteinase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.602e-44
Identity = 86/144 (59.72%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAEE 593
            +++ V D++ A +GR EI +AE EMPGLMA R EF  +QP KGA+I GSLHMTIQTAVLIETL ALGA+VRW SCNIFSTQDH              +KGE+L+EYW  T +  DW  GG P++I+DDGGDATLL+H GA+AE+
Sbjct:    9 QDYLVADINLAGWGRKEIAIAETEMPGLMAIRDEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGADVRWASCNIFSTQDHAAAAIAAGGTPVFAFKGESLKEYWDFTHRIFDWADGGTPNMILDDGGDATLLLHLGARAEK 152          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_SOLUE (Adenosylhomocysteinase OS=Solibacter usitatus (strain Ellin6076) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 89/154 (57.79%), Postives = 105/154 (68.18%), Query Frame = 3
Query:  129 MALSVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAE 590
            M  + EK  S   FKV DLS A++GR EI ++E EMPGLMA R ++   +P  G +ITGSLHMTIQTAVLIETL  LGA VRW SCNIFSTQDH              WKGE+L+EYWWCT +A+    G GP L+VDDGGD TLLIH+G + E
Sbjct:    1 MGTATEK-LSDATFKVADLSLAEWGRKEISVSEFEMPGLMAIRRKYAKEKPLAGVRITGSLHMTIQTAVLIETLVDLGASVRWASCNIFSTQDHAAAAIAKAGVPVFAWKGESLEEYWWCTLQAVTHPGGKGPQLVVDDGGDVTLLIHKGYELE 153          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_RHILW (Adenosylhomocysteinase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 86/143 (60.14%), Postives = 104/143 (72.73%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAE 590
            +++ V D+  ADFGR EI +AE EMPGLM+CR EFG ++P KGA+ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGE+L++YW  T+K   W  GG  ++I+DDGGDAT+ I  GA+AE
Sbjct:    5 KDYVVADIGLADFGRKEITIAETEMPGLMSCRTEFGQAKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAAAGVPVFAIKGESLEDYWVYTDKIFQWADGGLSNMILDDGGDATMYILLGARAE 147          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_RHIL3 (Adenosylhomocysteinase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 86/143 (60.14%), Postives = 104/143 (72.73%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAE 590
            +++ V D+  ADFGR EI +AE EMPGLM+CR EFG ++P KGA+ITGSLHMTIQTAVLIETL ALGAEVRW SCNIFSTQDH               KGE+L++YW  T+K   W  GG  ++I+DDGGDAT+ I  GA+AE
Sbjct:    5 KDYVVADIGLADFGRKEITIAETEMPGLMSCRTEFGQTKPLKGARITGSLHMTIQTAVLIETLVALGAEVRWASCNIFSTQDHAAAAIAASGVPVFAIKGESLEDYWVYTDKIFQWADGGLSNMILDDGGDATMYILLGARAE 147          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_METPP (Adenosylhomocysteinase OS=Methylibium petroleiphilum (strain PM1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 92/156 (58.97%), Postives = 109/156 (69.87%), Query Frame = 3
Query:  138 SVEKSASGREFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWG----PGGGPDLIVDDGGDATLLIHEGAKAEE 593
            +V K     +  V DLS AD+GR EI++AE EMPGLMA R EF  SQP KGA+ITGSLHMTIQTAVL+ETL ALGA+VRW SCNIFSTQDH              +KGETL +YW  T +  D+G     G GP++I+DDGGDATLL+H G KAE+
Sbjct:    3 AVLKPTPTHDHHVADLSLADWGRKEIKIAETEMPGLMAIRQEFAASQPLKGARITGSLHMTIQTAVLVETLQALGAQVRWASCNIFSTQDHAAAALVAAGTPVFAYKGETLTDYWDYTHRIFDFGAKGTDGEGPNMILDDGGDATLLMHLGQKAEK 158          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_COREF (Adenosylhomocysteinase OS=Corynebacterium efficiens GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.317e-44
Identity = 93/181 (51.38%), Postives = 114/181 (62.98%), Query Frame = 3
Query:  165 EFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDH--------XXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAEEIYEKTGKLPDPASTDNAEFQIVLTIIRDGL 683
            +FKV DLS A+ GR +I LAE EMPGLM  R E+   QP KGA+I GS+HMT+QTAVLIETLTALGAEVRW SCNIFSTQD                       WKGETL EYWWC  +   W  G  P++I+DDGGDAT+ +  G +    YEK G +P P + D+ E+   L ++R+ L
Sbjct:    6 DFKVADLSLAEAGRHQIRLAEYEMPGLMQLRREYAEEQPLKGARIAGSIHMTVQTAVLIETLTALGAEVRWASCNIFSTQDEAAAAIVVGDGTPEDPQGVPVFAWKGETLDEYWWCINQIFSW-EGELPNMILDDGGDATMAVIRGRE----YEKAGVVPQPEANDSDEYIAFLGMLREVL 181          
BLAST of FC931815 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPW (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH7803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.556e-44
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 3
Query:  162 REFKVKDLSQADFGRLEIELAEVEMPGLMACRAEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHXXXXXXXXXXXXXXWKGETLQEYWWCTEKALDWGPGGGPDLIVDDGGDATLLIHEGAKAEE 593
            +++ + D++QA+FGR E+++AE EMPGLMA R ++G  +P KGA+I GSLHMTIQTA LIETL  LGAEVRW SCNIFSTQDH               KGETL+EYW  T + L+WG GG P++I+DDGGDAT L+  G+KAE+
Sbjct:   15 QDYVIADINQAEFGRKELDIAETEMPGLMALREKYGTEKPLKGARIAGSLHMTIQTACLIETLVELGAEVRWASCNIFSTQDHAAAAMAARDIPVFAVKGETLEEYWEYTHRILEWGDGGSPNMILDDGGDATGLVMLGSKAEQ 158          
The following BLAST results are available for this feature:
BLAST of FC931815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 235
Match NameE-valueIdentityDescription
SAHH_OCHA44.289e-4461.38Adenosylhomocysteinase OS=Ochrobactrum anthropi (s... [more]
SAHH_RALEH5.602e-4459.72Adenosylhomocysteinase OS=Ralstonia eutropha (stra... [more]
SAHH_METNO5.602e-4459.31Adenosylhomocysteinase OS=Methylobacterium nodulan... [more]
SAHH_CUPTR5.602e-4459.72Adenosylhomocysteinase OS=Cupriavidus taiwanensis ... [more]
SAHH_SOLUE7.317e-4457.79Adenosylhomocysteinase OS=Solibacter usitatus (str... [more]
SAHH_RHILW7.317e-4460.14Adenosylhomocysteinase OS=Rhizobium leguminosarum ... [more]
SAHH_RHIL37.317e-4460.14Adenosylhomocysteinase OS=Rhizobium leguminosarum ... [more]
SAHH_METPP7.317e-4458.97Adenosylhomocysteinase OS=Methylibium petroleiphil... [more]
SAHH_COREF7.317e-4451.38Adenosylhomocysteinase OS=Corynebacterium efficien... [more]
SAHH_SYNPW9.556e-4457.64Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC34201E03EF PostHarveN Citrus clementina cDNA clone C34201E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931815 ID=FC931815; Name=FC931815; organism=Citrus clementina; type=EST; length=691bp
GGCTCACACCCACTCTCTCTCTCTCTCGCTTGTACAATCATTCACTTTGT
TTGGTTAGTTTCCAAAGAGAGAGTAGATTGCCCTCTCTTCCTTCTTTCTT
TTAGATCTATCAATTCTATTAATCAACCATGGCTTTGTCCGTCGAGAAAT
CCGCTAGCGGTCGTGAATTCAAGGTGAAGGATCTGTCCCAGGCTGACTTC
GGCCGCCTCGAAATCGAGTTGGCCGAAGTCGAAATGCCGGGGCTCATGGC
TTGCCGCGCCGAGTTCGGCCCTTCACAGCCTTTCAAAGGAGCCAAGATCA
CCGGTTCACTCCACATGACCATCCAGACGGCCGTCCTCATCGAGACACTC
ACCGCTCTCGGCGCCGAAGTCCGCTGGTGCTCCTGCAACATCTTCTCAAC
CCAAGACCACGCGGCCGCCGCCATCGCACGTGACTCCGCCTCCGTCTTTG
CCTGGAAGGGTGAGACCCTCCAGGAGTACTGGTGGTGCACGGAGAAAGCC
CTGGACTGGGGTCCCGGCGGCGGCCCAGATCTCATCGTCGATGACGGTGG
TGACGCCACGTTGTTGATCCACGAGGGAGCCAAAGCTGAGGAGATCTACG
AGAAGACCGGGAAGTTGCCCGACCCGGCCTCCACCGACAACGCCGAGTTT
CAGATTGTTTTGACTATCATTAGAGATGGGTTGAAGGCCGA
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