FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_POLSJ (NADH-quinone oxidoreductase subunit B OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=nuoB PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.288e-47
Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FMTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMSEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_LEPCP (NADH-quinone oxidoreductase subunit B OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=nuoB PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.600e-47
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV + +D ++N+ + GS+WPM+FGLACCAVEMMH GA+RYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWV+SMGSCAN              CDR+VPVD+YVPGC
Sbjct:   11 FVTTSVDTLINWSKTGSLWPMTFGLACCAVEMMHAGASRYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRVVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICTY (NADH-quinone oxidoreductase subunit B OS=Rickettsia typhi GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLSKIDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMF (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGC
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_NEIMB (NADH-quinone oxidoreductase subunit B OS=Neisseria meningitidis serogroup B GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGC
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG2 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain NCCP11945) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 83/122 (68.03%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D V+NY+R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGC
Sbjct:   11 FITTSADTVLNYMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_METPP (NADH-quinone oxidoreductase subunit B OS=Methylibium petroleiphilum (strain PM1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.552e-47
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D ++N+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALR+VYDQM +PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FITTSADKLINWSKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRRVYDQMAEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICRS (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Sheila Smith) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICRO (NADH-quinone oxidoreductase subunit B OS=Rickettsia rickettsii (strain Iowa) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICPU (NADH-quinone oxidoreductase subunit B OS=Rickettsia peacockii (strain Rustic) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_POLSJ4.288e-4768.85NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_LEPCP5.600e-4767.21NADH-quinone oxidoreductase subunit B OS=Leptothri... [more]
NUOB_RICTY9.552e-4767.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_NEIMF9.552e-4768.03NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIMB9.552e-4768.03NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_NEIG29.552e-4768.03NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_METPP9.552e-4767.21NADH-quinone oxidoreductase subunit B OS=Methylibi... [more]
NUOB_RICRS1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICRO1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICPU1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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