FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICPR (NADH-quinone oxidoreductase subunit B OS=Rickettsia prowazekii GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICFE (NADH-quinone oxidoreductase subunit B OS=Rickettsia felis GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICCN (NADH-quinone oxidoreductase subunit B OS=Rickettsia conorii GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICCK (NADH-quinone oxidoreductase subunit B OS=Rickettsia canadensis (strain McKiel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVDIY+PGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDIYIPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICB8 (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain OSU 85-389) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICAE (NADH-quinone oxidoreductase subunit B OS=Rickettsia africae (strain ESF-5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 82/122 (67.21%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_GRABC (NADH-quinone oxidoreductase subunit B OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.248e-46
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV++ LD +VN+ R GS+WPM+FGLACCAVEM+H    RYDLDRFG+I R SPRQSDVM+VAGTLTNKMAPALR+VYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGC
Sbjct:   46 FVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 167
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB1_ACICJ (NADH-quinone oxidoreductase subunit B 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.128e-46
Identity = 88/122 (72.13%), Postives = 98/122 (80.33%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV++ LD +VN+ R GS+WPM+FGLACCAVEM+H    R+DLDRFGII R SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   38 FVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRWDLDRFGIIPRNSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 159
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG1 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoB PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 82/122 (67.21%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+ +  D V+N++R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGC
Sbjct:   11 FITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RICM5 (NADH-quinone oxidoreductase subunit B OS=Rickettsia massiliae (strain Mtu5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 4.741e-46
Identity = 81/122 (66.39%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            F+++K+D+V+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   21 FLLTKVDNVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGC 142
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_RICPR1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICFE1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCN1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCK1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICB81.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICAE1.248e-4667.21NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_GRABC1.248e-4670.49NADH-quinone oxidoreductase subunit B OS=Granuliba... [more]
NUOB1_ACICJ2.128e-4672.13NADH-quinone oxidoreductase subunit B 1 OS=Acidiph... [more]
NUOB_NEIG13.630e-4667.21NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]
NUOB_RICM54.741e-4666.39NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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