FC931831

Overview
NameFC931831
Unique NameFC931831
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931831_ssr242 microsatellite FC931831_ssr242:242..253. BLAST: Citrus ESTs to Populus V2 proteins
FC931831_ssr70 microsatellite FC931831_ssr70:70..89. BLAST: Citrus ESTs to Populus V2 proteins
Ccv1_Contig11434 contig Ccv1_Contig11434:26..730. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RUTMC (NADH-quinone oxidoreductase subunit B OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoB PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.983e-49
Identity = 88/122 (72.13%), Postives = 102/122 (83.61%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV + L++V+N+ R GS+WPM+FGLACCAVEMM  G++RYDLDRFGI+FRP+PRQSD+M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTSLNNVINWARTGSLWPMTFGLACCAVEMMEAGSSRYDLDRFGIVFRPTPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB1_CHRVO (NADH-quinone oxidoreductase subunit B 1 OS=Chromobacterium violaceum GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.983e-49
Identity = 88/122 (72.13%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++NY R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FVTTTADKLINYTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RALEJ (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain JMP134) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.814e-49
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_MAGSA (NADH-quinone oxidoreductase subunit B OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 7.814e-49
Identity = 87/122 (71.31%), Postives = 101/122 (82.79%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV++ +D VVN+ R GS+WPM+FGLACCAVEMMH G +RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   39 FVLASVDAVVNWARTGSLWPMTFGLACCAVEMMHAGCSRYDMDRFGVVFRPSPRQSDLMIVAGTLTNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 160
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_VARPS (NADH-quinone oxidoreductase subunit B OS=Variovorax paradoxus (strain S110) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FVTTTYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_THISH (NADH-quinone oxidoreductase subunit B OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 88/122 (72.13%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTSADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDLDRFGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RALME (NADH-quinone oxidoreductase subunit B OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_RALEH (NADH-quinone oxidoreductase subunit B OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_CUPTR (NADH-quinone oxidoreductase subunit B OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 89/122 (72.95%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGC
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDMDRFGVIFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGC 132
[Close]
BLAST of FC931831 vs. ExPASy Swiss-Prot
Match: NUOB_BURXL (NADH-quinone oxidoreductase subunit B OS=Burkholderia xenovorans (strain LB400) GN=nuoB PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.021e-48
Identity = 88/122 (72.13%), Postives = 99/122 (81.15%), Query Frame = 3 
Query:  336 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGC 701
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGC
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGC 132
The following BLAST results are available for this feature:
BLAST of FC931831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_RUTMC5.983e-4972.13NADH-quinone oxidoreductase subunit B OS=Ruthia ma... [more]
NUOB1_CHRVO5.983e-4972.13NADH-quinone oxidoreductase subunit B 1 OS=Chromob... [more]
NUOB_RALEJ7.814e-4972.95NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_MAGSA7.814e-4971.31NADH-quinone oxidoreductase subunit B OS=Magnetosp... [more]
NUOB_VARPS1.021e-4871.31NADH-quinone oxidoreductase subunit B OS=Variovora... [more]
NUOB_THISH1.021e-4872.13NADH-quinone oxidoreductase subunit B OS=Thioalkal... [more]
NUOB_RALME1.021e-4872.95NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_RALEH1.021e-4872.95NADH-quinone oxidoreductase subunit B OS=Ralstonia... [more]
NUOB_CUPTR1.021e-4872.95NADH-quinone oxidoreductase subunit B OS=Cupriavid... [more]
NUOB_BURXL1.021e-4872.13NADH-quinone oxidoreductase subunit B OS=Burkholde... [more]

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Properties
Property NameValue
Genbank descriptionC34201F08EF PostHarveN Citrus clementina cDNA clone C34201F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931831 ID=FC931831; Name=FC931831; organism=Citrus clementina; type=EST; length=701bp
GGTAACCACCACTTTCAAACCCCAACAACAATCAATTTCTCTCTCGCTTT
GCCCCCGTGTGAGAAAACTAAACCAAACCAAACCAAACCCCACCCCACAA
CCCCCAAAACACAAGCCCAAAAAAAAAAAAAAAAACTATGGCGGTACTCA
CCAAAAACACTGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCC
TGTCTCCACACGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTC
CTCCTTCTCCTCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGA
CCACAAGTCCAGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAA
TTGGATGATGTCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTC
CTTCGGGCTGGCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTC
GTTACGATTTAGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAA
TCCGATGTCATGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGC
CCTTCGCAAGGTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTA
TGGGAAGCTGTGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTT
GTTCGGGGTTGCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTG
C
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