FC931833

Overview
NameFC931833
Unique NameFC931833
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length750
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC931833_ssr683 microsatellite FC931833_ssr683:683..694. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig517 contig Ccv1_Contig517:184..933. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PSEPF (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain Pf0-1) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 55/224 (24.55%), Postives = 104/224 (46.43%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + +R+F     + VP V+WD+   KVL +E + G+++ +L  L  Q  +   +A R +E +  Q+ +  FFHAD HPGN+ V          I  D G++G +    ++ L    +A +++D ++V Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L PD  L   A P+ +
Sbjct:  212 NASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVNPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PSEF5 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 55/224 (24.55%), Postives = 104/224 (46.43%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + +R+F     + VP V+WD+   KVL +E + G+++ +L  L  Q  +   +A R +E +  Q+ +  FFHAD HPGN+ V          I  D G++G +    ++ L    +A +++D ++V Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L PD  L   A P+ +
Sbjct:  212 NASQLKRNFEGSPLLYVPQVYWDWCRPKVLVMERIYGIQVTDLATLADQRTDMKMLAERGVEIFFTQVFRDSFFHADMHPGNIFVSTVQPWSPQYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWNTAQPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_CITK8 (Probable ubiquinone biosynthesis protein ubiB OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.747e-18
Identity = 53/224 (23.66%), Postives = 107/224 (47.77%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F N   + VP V+ DY +  ++ +E + G+ ++++  L+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFENSPMLYVPEVYSDYCSQDMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHEDO (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 53/224 (23.66%), Postives = 109/224 (48.66%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + VP ++ D + T+++ +E + G+ +++L AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D +++ Q  ++   +    D+ +  ++++   + + ++ P  + +   +   LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFLDSDALYVPYIYEDLSFTRLIVMERIYGIAVSDLSALKAQGTNLKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPDNPYYIGLDCGIMGTLTDVDKRYLAENFLAFFNRDYQRIAQLHLESGWVSEHTDIVAFEQAIKIVCEPMFNK-PLAEISFGHVLLALFRTARQFNMVVQPQLVLLQKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PSE14 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ubiB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.587e-18
Identity = 56/224 (25.00%), Postives = 104/224 (46.43%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            N+ + RR+F     + VP V+WD+   KVL +E + G+++ ++  L  Q  +   +A R +E +  QI +  FFHAD HPGN+ V          I  D G++G +    ++ L    +A +++D ++V Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L PD  L   A PY +
Sbjct:  212 NSSQLRRNFEGSDLLYVPQVYWDWCRPKVLVMERIYGLQVTDMAGLADQRTDMKLLAERGVEIFFTQIFRDSFFHADMHPGNIFVSTVNPWSPKYIAIDCGIVGSLTPEDQDYLARNLFAFFKRDYRRVAQLHIDSGWVPAETKLNEFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAQPYLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHESR (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-7) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 51/224 (22.77%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFLDSDALYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHESM (Probable ubiquinone biosynthesis protein ubiB OS=Shewanella sp. (strain MR-4) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.685e-18
Identity = 51/224 (22.77%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDEA----LIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + R +F +   + +P V+ ++   +++ +E + G+ ++++ AL  QG N   +A R +E +  Q+ +  FFHAD HPGN+ +  D       I  D G+MG +    +  L + F A + +D  ++ Q  I+   +    D+ +  ++++   + + ++ P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  211 NAIKLRNNFLDSDALYIPYVYEEFCYPRLMVMERIYGIPVSDIAALKAQGTNFKLLAERGVELFFTQVFRDNFFHADMHPGNIFISRDHPENPYYIGLDCGIMGTLSEVDKRYLAENFLAFFNRDYHRIAQLYIESGWVSEKTDLQAFEQAIKVVCEPMFNK-PLDEISFGHVLLELFRTARHFDIVVQPQLVLLEKTLLYIEGLGRQLYPQLDLWQTAKPFLE 433          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_PSEE4 (Probable ubiquinone biosynthesis protein ubiB OS=Pseudomonas entomophila (strain L48) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 56/224 (25.00%), Postives = 103/224 (45.98%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDL----DEALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F   + + VP V+WD    KVL +E + GV + ++  L  Q  +   +A R +E +  Q+ +  FFHAD HPGN+ V          I  D G++G + +  ++ L     A +++D ++V Q  ID   +     ++    +++   + +  + P +  +   +   LF  A+            + +    +EG+G  L PD  L   A P+ +
Sbjct:  213 NASQLRRNFEGSELMYVPQVYWDLCRPKVLVMERIYGVPVTDMATLADQRTDMKMLAERGVEVFFTQVFRDSFFHADMHPGNIFVSTVKPWSPQYIAIDCGIVGSLTAEDQDYLARNLIAFFKRDYRRVAQLHIDSGWVPAQTKVNEFEAAIRTVCEPIF-EKPLKDISFGQVLMRLFQTARRFNMEVQPQLVLLQKTLLNIEGLGRQLYPDLDLWSTAKPFLE 435          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_ESCF3 (Probable ubiquinone biosynthesis protein ubiB OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ubiB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.119e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYIEGVGRQLYPQLDLWKTAKPFLE 434          
BLAST of FC931833 vs. ExPASy Swiss-Prot
Match: UBIB_SHIFL (Probable ubiquinone biosynthesis protein ubiB OS=Shigella flexneri GN=ubiB PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.992e-18
Identity = 52/224 (23.21%), Postives = 108/224 (48.21%), Query Frame = 3
Query:    6 NADRFRRDFRNIKWVRVPLVFWDYTATKVLTLEYVPGVKINELKALDLQGYNRSQIAPRAIEAYLNQILKTGFFHADPHPGNLAVDLDE----ALIYYDFGMMGEIKSFTRERLLDLFYAVYEKDAKKVIQRLIDLEALQPTGDMSSVRRSVQFFLDNLLSQSPDQQQTLAAIGEDLFAIAQDQPFRFPSTFTFVIRAFSTLEGIGNILDPDFSLCEVAAPYAQ 665
            NA + RR+F +   + +P V+ DY +  ++ +E + G+ ++++ AL+  G N   +A R ++ +  Q+ +  FFHAD HPGN+ V  +       I  D G++G +    +  L + F A + +D +KV +  +D   + P  ++     +++   + +  + P  + +   +  +LF  A+            + +    +EG+G  L P   L + A P+ +
Sbjct:  212 NAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIF-EKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLE 434          
The following BLAST results are available for this feature:
BLAST of FC931833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
UBIB_PSEPF2.747e-1824.55Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_PSEF52.747e-1824.55Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_CITK82.747e-1823.66Probable ubiquinone biosynthesis protein ubiB OS=C... [more]
UBIB_SHEDO3.587e-1823.66Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_PSE143.587e-1825.00Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_SHESR4.685e-1822.77Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_SHESM4.685e-1822.77Probable ubiquinone biosynthesis protein ubiB OS=S... [more]
UBIB_PSEE46.119e-1825.00Probable ubiquinone biosynthesis protein ubiB OS=P... [more]
UBIB_ESCF36.119e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=E... [more]
UBIB_SHIFL7.992e-1823.21Probable ubiquinone biosynthesis protein ubiB OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC34201F10EF PostHarveN Citrus clementina cDNA clone C34201F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931833 ID=FC931833; Name=FC931833; organism=Citrus clementina; type=EST; length=750bp
GAAAAAATGCTGATAGATTCCGTCGAGATTTTCGGAATATAAAGTGGGTC
CGGGTACCTCTGGTGTTTTGGGATTATACTGCTACAAAGGTGTTGACATT
GGAGTATGTACCAGGAGTTAAGATCAATGAGTTGAAAGCACTAGATTTGC
AGGGTTATAATCGTTCTCAAATTGCACCGCGTGCAATTGAAGCGTACTTG
AATCAGATACTCAAAACTGGTTTCTTTCATGCTGATCCTCATCCTGGAAA
TCTTGCTGTCGATTTAGATGAAGCACTCATCTATTATGATTTTGGTATGA
TGGGGGAGATTAAATCCTTTACCCGTGAAAGATTGCTTGATCTTTTCTAT
GCAGTTTATGAGAAAGATGCCAAAAAGGTTATCCAAAGGTTGATTGATCT
CGAAGCACTTCAACCCACAGGAGATATGTCATCGGTAAGGAGATCCGTGC
AATTTTTCTTGGACAATTTGCTAAGCCAGAGTCCAGATCAGCAGCAGACT
TTGGCTGCAATTGGAGAGGATTTGTTTGCAATAGCTCAAGATCAACCATT
TCGGTTTCCATCCACCTTTACTTTCGTTATAAGGGCATTCTCCACACTTG
AAGGTATCGGCAACATTCTTGACCCAGATTTTTCCCTTTGTGAGGTTGCT
GCACCTTATGCACAGGAGCTATTGGATTTAAACAGCAGCAGCAGTCTGGA
ACACAGCTAGTGGAGCAAATCAGAAACAGCTGATGATGCAGATCTTCGAC
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