FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GRHPR_HUMAN (Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 55/172 (31.98%), Postives = 90/172 (52.33%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL-GSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRGKKPVPYAFYS----NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + T S G++H+ + E ++RGI V     + +D  A+ AV LL+   R++  A   ++ G W+      L G  L    VGI+GLG IG  +A+RL+ FG    LY  R  +P   A +     +  ELAA SD +++ C+LT  T  + N++    + +  +  N+ RG V+
Sbjct:   78 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVV 249          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GYAR_KORCO (Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.217e-18
Identity = 62/225 (27.56%), Postives = 109/225 (48.44%), Query Frame = 1
Query:   49 ISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYP---LGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            I   F+L    + +   ++ +I      +A++     P+             V   + G ++I + E  +RGI V N   + ++  AD A  LL+   R++  ADR++R+G W K+  +P   LG  + G+ +GIVG+G IG  VA+R + FG  +L Y+S  ++         Y  + +L   SD + +   LT++T  MI  E +  + +  I+ N  RG V+
Sbjct:   19 IEEHFELDLWKDEAPPSKKVIIERVKDCDALVSLLTDPIDAEVFEAAPKLRIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFALLMAAARRVVEADRYVREGKW-KVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVARRAKGFGMRILYYDSIRREDFEKELGVEYVPLEKLLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVV 242          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_METTH (D-3-phosphoglycerate dehydrogenase OS=Methanobacterium thermoautotrophicum GN=serA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.508e-18
Identity = 62/225 (27.56%), Postives = 110/225 (48.89%), Query Frame = 1
Query:   40 DKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL----YNSRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            +K IS   ++++   ++    + L+      +AI+    + VT            +  A  GV+++ +     RGI V NA    S   A+ ++GL++ + RKI+ ADR +++G W K  +  +G +L GK +GI+G+G IG QV  R +AFG +++    Y S+          +++  L   SD + I   LT +TR +I+ +    +     I N  RG +I
Sbjct:   14 EKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAPRLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSVKEGKWEK--NRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGVTVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGII 236          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_METJA (D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 57/168 (33.93%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  214 ASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVL-YNSRGKKPVPYA----FYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            A  GV++I +     +GI V NA    S   A+  +GL++   R I  A   L++G W +      G +L GK +G++GLG IG QV KR +AFG N++ Y+    K V  +       ++ EL   +D + +   LT +TR +I RE +  + K  II N  RG +I
Sbjct:   70 AGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASLKRGEWDR--KRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGVELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLI 235          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ENTAG (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter agglomerans GN=tkrA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.341e-15
Identity = 52/170 (30.59%), Postives = 87/170 (51.18%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGI + +  ++ ++  AD  + L++   R++      ++ G W + IG    G  +  K++GI+G+G IGL +A+R    FG  +LYN+R   +     F +  C+L      SD L I   LT+QT  MI RE +  +    I+ N GRG V+
Sbjct:   71 TISVGYDNFDVEALNQRGIVLIDTPTVLTETVADTMMALVLSSARRVVEVAERVKAGEWRRSIGPDWFGIDVHHKKMGILGMGRIGLALAQRAHHGFGMPILYNARKHHEEAESRFNAQYCDLDTLLRESDFLCISLPLTEQTHHMIGREQLAKMKPSAILINAGRGPVV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERPY (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W + IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A +D L I   +T+QT  MI RE +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKIKSSAILINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERPS (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pseudotuberculosis GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W + IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A +D L I   +T+QT  MI RE +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERPP (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis (strain Pestoides F) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W + IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A +D L I   +T+QT  MI RE +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERPN (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W + IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A +D L I   +T+QT  MI RE +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERPG (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=ghrB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/170 (30.59%), Postives = 86/170 (50.59%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W + IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A +D L I   +T+QT  MI RE +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVEALSQRGIALMHTPTVLTETVADTMMALMLSTARRVVELAERVKAGEWQESIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEQRFGARHCSLDTLLAEADFLCITLPMTEQTYHMIGREQLAKMKSSAILINAGRGPVV 241          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GRHPR_HUMAN1.110e-1831.98Glyoxylate reductase/hydroxypyruvate reductase OS=... [more]
GYAR_KORCO4.217e-1827.56Glyoxylate reductase OS=Korarchaeum cryptofilum (s... [more]
SERA_METTH5.508e-1827.56D-3-phosphoglycerate dehydrogenase OS=Methanobacte... [more]
SERA_METJA1.039e-1633.93D-3-phosphoglycerate dehydrogenase OS=Methanocaldo... [more]
GHRB_ENTAG3.341e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_YERPY9.722e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPS9.722e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPP9.722e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPN9.722e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
GHRB_YERPG9.722e-1530.59Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
back to top