FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECOL5 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.521e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETYHLFGAEQFGKMKSSAIFINAGRGPVV 241
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GHRB_ECOL56.521e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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