FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: YN14_YEAST (Putative 2-hydroxyacid dehydrogenase YNL274C OS=Saccharomyces cerevisiae GN=YNL274C PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 57/173 (32.95%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIG---DYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGC-NVLYNSRGKKPVPYAF---YSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            V    AG + I +   ++R I VAN   + S+  AD  V LL+   R     +R L +G W + G     P G    GK VGI+GLG IG  + +RL+ FG  N +Y++R + P        Y    E    SD + +   L   T  +IN E +  +    +I N  RGAVI
Sbjct:   86 VCHTGAGYDQIDVEPFKKRHIQVANVPDLVSNATADTHVFLLLGALRNFGIGNRRLIEGNWPEAGPACGSPFGYDPEGKTVGILGLGRIGRCILERLKPFGFENFIYHNRHQLPSEEEHGCEYVGFEEFLKRSDIVSVNVPLNHNTHHLINAETIEKMKDGVVIVNTARGAVI 258          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: YGDH_SCHPO (Putative 2-hydroxyacid dehydrogenase C1773.17c OS=Schizosaccharomyces pombe GN=SPBC1773.17c PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 53/171 (30.99%), Postives = 90/171 (52.63%), Query Frame = 1
Query:  208 VTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY-----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGI-IXNVGRGAVI 702
            VT +AG N++ +    R G+ VAN  +  ++  A+  + L +   R    A++ LR G W +  +  L     GKRVGI+G+G IG   A+++   GC ++Y++R +          A + +  EL ++SD + I C LT  T  +I+ +    + K+G+ I N  RGA+I
Sbjct:   88 VTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMCTLRGAREAEQSLRLGKWRQ--NLSLTDDPYGKRVGIIGMGAIGKSFAQKILPLGCEIVYHNRNRLEAEEEKRLGASFVSFDELLSSSDVISINCPLTPATHDLISTKEFEKM-KDGVYIINTARGAII 255          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_BACSU (D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis GN=serA PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 57/200 (28.50%), Postives = 97/200 (48.50%), Query Frame = 1
Query:  124 HSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNV------LYNSRGKK-PVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            H+ +A+L    + VT            V  A  GV++I + E  + G+ V NA +  +   A+    ++  + R I  A+  ++   W++     +GS+L GK +GIVGLG IG ++A+R +AFG  V      L   R KK  V    +  V E   ++D + +   LT +T+ ++N+E +    K   + N  RG +I
Sbjct:   39 HTFDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISVKSREWNRTAY--VGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGVNSRTFEEVLE---SADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGII 233          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y1888_STAEQ (Putative 2-hydroxyacid dehydrogenase SERP1888 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1888 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 54/173 (31.21%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            +    AG N+I +   R++ I V N     ++  AD  +GL++ V R+I   D   R   +   G  PL   G ++ GK +GI+GLG IG  VAKR +AF  +VLY    +K        A Y ++  L  N+D + I  A       MI+ E    +     + N GRG ++
Sbjct:   70 IANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y1879_STAES (Putative 2-hydroxyacid dehydrogenase SE_1879 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1879 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 54/173 (31.21%), Postives = 82/173 (47.40%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            +    AG N+I +   R++ I V N     ++  AD  +GL++ V R+I   D   R   +   G  PL   G ++ GK +GI+GLG IG  VAKR +AF  +VLY    +K        A Y ++  L  N+D + I  A       MI+ E    +     + N GRG ++
Sbjct:   70 IANYGAGFNNIDVEYARQQNIDVTNTPHASTNATADLTIGLILSVARRIVEGDHLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGGAVAKRARAFDMDVLYTGPHRKEEKERDIGAKYVDLDTLLKNADFITINAAYNPSLHHMIDTEQFNKMKSTAYLINAGRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_MYCTU (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium tuberculosis GN=serA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  109 LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPYAFYS----NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            L++     +A+L    + V             V  A  G++++ +     RG+ V NA +     AA+ A+ LL+   R+I +AD  LR+  W +      G+++ GK VG+VGLG IG  VA+R+ AFG  V+       P   A       ++ +L A +D + +    T +T  +I++E +       II N  RG ++
Sbjct:   37 LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 236          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_MYCLE (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium leprae GN=serA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 56/202 (27.72%), Postives = 94/202 (46.53%), Query Frame = 1
Query:  109 LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPYAFYS----NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            L++     +A+L    + V             V  A  G++++ +     RG+ V NA +     AA+ A+ LL+   R+I+ AD  LR  +W +      G+++ GK VG+VGLG IG  VA R+ AFG +V+       P   A       +  +L A +D + +    T +T  +I++E +       II N  RG ++
Sbjct:   37 LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIAEADASLRAHIWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAARIAAFGAHVIAYDPYVAPARAAQLGIELMSFDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 236          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: SERA_MYCBO (D-3-phosphoglycerate dehydrogenase OS=Mycobacterium bovis GN=serA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.404e-13
Identity = 56/202 (27.72%), Postives = 95/202 (47.03%), Query Frame = 1
Query:  109 LISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPYAFYS----NVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            L++     +A+L    + V             V  A  G++++ +     RG+ V NA +     AA+ A+ LL+   R+I +AD  LR+  W +      G+++ GK VG+VGLG IG  VA+R+ AFG  V+       P   A       ++ +L A +D + +    T +T  +I++E +       II N  RG ++
Sbjct:   37 LLAAVPEADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS--GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLV 236          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_PECCP (Glyoxylate/hydroxypyruvate reductase B OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 50/170 (29.41%), Postives = 84/170 (49.41%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYP-LGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGKKP-VPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G +  ++     +G+ + +  ++ ++  AD  + L++   R++      ++ G W    D    G+ +  K +GI+G+G IGL VA+R    F   VLYN+R         F +  C+L    A SD L I   LT +T  +I RE +  +    I+ N+GRGAV+
Sbjct:   68 TISVGYDTFNVDALNEKGVILMHTPTVLTETVADTVLALMLASARRVVEVAERVKAGEWKGGVDSDWFGTDVHHKTIGILGMGRIGLAVAQRAHFGFSMPVLYNARRHHAEAEQRFNARHCDLDTLLAESDFLCITLPLTTETHHLIGREQLAKMKPSAILINIGRGAVV 237          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.833e-13
Identity = 55/173 (31.79%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGK------KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            ++TA  G +HI +P     G+ VA   GS     A D  + +LI + R      + +  G W+  G       L GK VG VG G IG  + +RL+ F CN+LY+ R K      K +   +  ++  +    D ++I   LT++TR M N+E +  + K  II N  RGA++
Sbjct:  115 LLTAGIGSDHIDLPAAAAAGLTVAEVTGSNTVSVAEDELMRILI-LLRNFLPGYQQVVHGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIM 286          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
YN14_YEAST1.075e-1332.95Putative 2-hydroxyacid dehydrogenase YNL274C OS=Sa... [more]
YGDH_SCHPO1.075e-1330.99Putative 2-hydroxyacid dehydrogenase C1773.17c OS=... [more]
SERA_BACSU1.075e-1328.50D-3-phosphoglycerate dehydrogenase OS=Bacillus sub... [more]
Y1888_STAEQ1.404e-1331.21Putative 2-hydroxyacid dehydrogenase SERP1888 OS=S... [more]
Y1879_STAES1.404e-1331.21Putative 2-hydroxyacid dehydrogenase SE_1879 OS=St... [more]
SERA_MYCTU1.404e-1327.72D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCLE1.404e-1327.72D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
SERA_MYCBO1.404e-1327.72D-3-phosphoglycerate dehydrogenase OS=Mycobacteriu... [more]
GHRB_PECCP1.833e-1329.41Glyoxylate/hydroxypyruvate reductase B OS=Pectobac... [more]
FDH1_ORYSJ1.833e-1331.79Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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