FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y752_STAHJ (Putative 2-hydroxyacid dehydrogenase SH0752 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0752 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 51/173 (29.48%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLR-QGL--WSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY----NSRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            +    AG N++ +   R + I V N     +   A+   GL++ V R+I   D+  R QG   W+ +  +  G ++ GK +GI+GLG IG  VAKR +AF  ++LY      + K+    A Y ++  L  N+D + I  A       MI+ E    +     + N GRG ++
Sbjct:   70 IANYGAGFNNVDVKYAREKDIDVTNTPKASTASTAELTFGLVLAVARRIVEGDKLSRTQGFDGWAPL--FFRGREVSGKTIGIIGLGEIGSAVAKRAKAFDMDILYTGPHQKKEKEREIGAKYVDLNTLLENADFITINAAYNPDLHHMIDTEQFKLMKSTAYLINAGRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2577_STAA8 (Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2296_STAAC (Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2254_STAA3 (Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2224_STAAW (Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2196_STAAS (Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_YERE8 (Glyoxylate/hydroxypyruvate reductase B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=ghrB PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 51/170 (30.00%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +    +RGIA+ +  ++ ++  AD  + L++   R++      ++ G W   IGD   G  +  K +GI+G+G IG+ +A+R    F   VLY SR   +     F +  C L    A  D L I   +T+QT  MI  E +  +    I+ N GRG V+
Sbjct:   72 TISVGYDNFDVDALSQRGIALMHTPTVLTETVADTMMALVLSSARRVVELAERVKAGEWQDSIGDDWFGVDVHHKTIGILGMGRIGMALAQRAHFGFSMPVLYTSRRPHEAAEKRFGARRCSLDTLLAEVDFLCITLPMTEQTYHMIGPEQLAKMKSSAILINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 54/173 (31.21%), Postives = 85/173 (49.13%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANA-GSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSR------GKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            ++TA  G +HI +P     G+ VA   GS     A D  + +LI + R      + + +G W+  G       L GK VG VG G  G  + +RL+ F CN+LY+ R       +K +   F  ++  +    D ++I   LT++TR M N+E +  + K  II N  RGA++
Sbjct:  116 LLTAGIGSDHIDLPAAAAAGLTVARVTGSNTVSVAEDELMRILI-LLRNFLPGYQQVVKGEWNVAGIAHRAYDLEGKTVGTVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIM 287          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2389_STAAR (Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 59/229 (25.76%), Postives = 97/229 (42.36%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI       A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKDATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2178_STAAB (Putative 2-hydroxyacid dehydrogenase SAB2178 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB2178 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.967e-13
Identity = 58/229 (25.33%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ + R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAIARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTAYLINASRGPIV 240          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
Y752_STAHJ5.335e-1329.48Putative 2-hydroxyacid dehydrogenase SH0752 OS=Sta... [more]
Y2577_STAA85.335e-1325.76Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577... [more]
Y2296_STAAC5.335e-1325.76Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=... [more]
Y2254_STAA35.335e-1325.76Putative 2-hydroxyacid dehydrogenase SAUSA300_2254... [more]
Y2224_STAAW5.335e-1325.76Putative 2-hydroxyacid dehydrogenase MW2224 OS=Sta... [more]
Y2196_STAAS5.335e-1325.76Putative 2-hydroxyacid dehydrogenase SAS2196 OS=St... [more]
GHRB_YERE85.335e-1330.00Glyoxylate/hydroxypyruvate reductase B OS=Yersinia... [more]
FDH_HORVU5.335e-1331.21Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
Y2389_STAAR6.967e-1325.76Putative 2-hydroxyacid dehydrogenase SAR2389 OS=St... [more]
Y2178_STAAB6.967e-1325.33Putative 2-hydroxyacid dehydrogenase SAB2178 OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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