FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2305_STAAM (Putative 2-hydroxyacid dehydrogenase SAV2305 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV2305 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: Y2098_STAAN (Putative 2-hydroxyacid dehydrogenase SA2098 OS=Staphylococcus aureus (strain N315) GN=SA2098 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 59/229 (25.76%), Postives = 98/229 (42.79%), Query Frame = 1
Query:   37 GDKFISRSFQLSKAYESSLSLEQFLISHAHSIEAILCSGDSPVTXXXXXXXXXXXXVVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPY----AFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            G K +   F++       L  +  LI    +  A++    + V             +    AG N+I +   R + I V N     ++  AD  +GL++ V R+I   D+  R   +   G  PL   G ++ GK +GI+GLG IG  VA+R +AF  +VLY    +K        A Y ++  L  N+D + I  A   +   +I+ E    +     + N  RG ++
Sbjct:   14 GLKLLQEHFEVEMYEGKGLVDKDTLIKGVKNATALISLLSTNVDKDVIDAGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEGDQLSRTTGFD--GWAPLFFRGREVSGKTIGIIGLGEIGSAVARRARAFDMDVLYTGPNRKEEKEREIGAKYVDLDTLLKNADFITINAAYNPKMHHLIDTEQFKMMKSTVYLINASRGPIV 240          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 52/173 (30.06%), Postives = 83/173 (47.98%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVAN-AGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGK------KPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            ++TA  G +HI +P     G+ VA   GS     A D  + +L+ + R        +  G W+  G       L GK VG VG G IG  + +RL+ F CN++Y+ R K      K +   +  ++  +    D ++I   LT++TR M N+E +  + K   I N  RGA++
Sbjct:  117 LLTAGVGSDHIDLPAAAAAGLTVAEITGSNTVSVAEDQLMRILL-LLRNFLPGHHQIVNGEWNVAGIAHRTYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIM 288          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: DHGY_CUCSA (Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.188e-12
Identity = 47/184 (25.54%), Postives = 89/184 (48.37%), Query Frame = 1
Query:  217 SAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRL-QAFGCNVLY--------------------NSRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + G N++ +    + G+AV N   + ++  A+ A  L +   R+I  AD F+R G +   + +  +G+ L G+ VG++G G IG   A+ + + F  N++Y                     + G+ PV +   S++ E+   +D + +   L   T  ++N+E + A+ K+ I+ N  RG VI
Sbjct:   94 AVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVI 277          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ENTS8 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ghrB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.552e-12
Identity = 52/171 (30.41%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCEL---AANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     + IA+ +  ++ ++  AD  + L++   R+       ++ G W+  IG    G  +  K +GIVG+G IGL +A+R   FG N  +LYN+R         F +  C+L    A SD + +   LTD+T  MI  E    + K  I  N GRG V+
Sbjct:   72 TVSVGYDNFDVDALSAKKIALMHTPTVLTETVADTLMTLVLTTARRALEVAERVKAGEWTGSIGPDWFGCDVHHKTLGIVGMGRIGLALAQRAH-FGFNMPILYNARRHHSEAEERFNARYCDLDTLLAESDFVCVILPLTDETHHMIGAEQFRKMKKSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ENT38 (Glyoxylate/hydroxypyruvate reductase B OS=Enterobacter sp. (strain 638) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 49/170 (28.82%), Postives = 80/170 (47.06%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNS-RGKKPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +     ++  AD  + L++   R++      ++ G W+K IG    G  + GK +GIVG+G IGL +A+R    F   +LYN+ R        F +  CEL      +D + +   LTD+T  +I +     + K  I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALNTRKILLMHTPYALTETVADTLMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGVDVHGKTLGIVGMGRIGLALAQRAHFGFNMPILYNARRHHSEAEERFEARYCELETLLQEADYVCLILPLTDETHHLIGKAEFEKMKKSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: DHGY_HYPME (Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 51/175 (29.14%), Postives = 83/175 (47.43%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPL---GSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLY------NSRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + T S G +HI +  C+ RGI V NA    +   A+ A+ LL+   R+    ++ +R   W   G  PL   G KL  K +GI G G+IG  +AKR Q F  ++ Y      +S  +      F+ ++  L + S    +    T +TR   N+  + +L +  I+ N  RG ++
Sbjct:   73 ISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWP--GWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLV 245          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: VANH_ENTFA (D-specific alpha-keto acid dehydrogenase OS=Enterococcus faecalis GN=vanHB PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 53/166 (31.93%), Postives = 78/166 (46.99%), Query Frame = 1
Query:  205 VVTASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSKIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCNVLYNSRGKKPVPYAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            + T S G NHI      R GI+V    +   D  AD A+ L++   R   S    + Q  +    D   G +L    VG++G G+IG  V KRL+ FGC VL     +K    A Y  + EL  NSD + +   L   TR +I +  +  + +   + N GRGA++
Sbjct:   76 ISTRSIGCNHIDTTAAERMGISVGTV-AYSPDSVADYALMLMLMAIRGAKSTIHAVAQQNFRL--DCVRGKELRDMTVGVIGTGHIGQAVVKRLRGFGCRVLAYDNSRK--IEADYVQLDELLKNSDIVTLHVPLCADTRHLIGQRQIGEMKQGAFLINTGRGALV 236          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_KLEP3 (Glyoxylate/hydroxypyruvate reductase B OS=Klebsiella pneumoniae (strain 342) GN=ghrB PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.458e-12
Identity = 44/170 (25.88%), Postives = 83/170 (48.82%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWSK-IGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQ-AFGCNVLYNSRGKKPVP----YAFYSNVCELAANSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R + + +  ++ ++  AD  + L++   R++      ++ G W+K IG    GS +  K +GIVG+G IG+ +A+R    FG  +LYN+R + P       A Y ++  L   +D + +   L+++T  +  +     +    I  N GRG V+
Sbjct:   72 TVSVGYDNFDVEALNARRVLLMHTPTVLTETVADTVMALVLSTARRVVEVAERVKAGEWTKSIGPDWFGSDVHHKTLGIVGMGRIGMALAQRAHFGFGMPILYNARRQHPQAEERFNARYCDLDTLLQEADFVCLILPLSEETHHLFGQAQFAKMKSSAIFINAGRGPVV 241          
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECOSM (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.516e-12
Identity = 49/171 (28.65%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R Q FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAQ-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241          
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
Y2305_STAAM1.188e-1225.76Putative 2-hydroxyacid dehydrogenase SAV2305 OS=St... [more]
Y2098_STAAN1.188e-1225.76Putative 2-hydroxyacid dehydrogenase SA2098 OS=Sta... [more]
FDH2_ORYSJ1.188e-1230.06Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
DHGY_CUCSA1.188e-1225.54Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-... [more]
GHRB_ENTS81.552e-1230.41Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
GHRB_ENT382.648e-1228.82Glyoxylate/hydroxypyruvate reductase B OS=Enteroba... [more]
DHGY_HYPME2.648e-1229.14Glycerate dehydrogenase OS=Hyphomicrobium methylov... [more]
VANH_ENTFA3.458e-1231.93D-specific alpha-keto acid dehydrogenase OS=Entero... [more]
GHRB_KLEP33.458e-1225.88Glyoxylate/hydroxypyruvate reductase B OS=Klebsiel... [more]
GHRB_ECOSM4.516e-1228.65Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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