FC931843

Overview
NameFC931843
Unique NameFC931843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO8A (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O8 (strain IAI1) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO81 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O81 (strain ED1a) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO7I (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO5E (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO57 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O157:H7 GN=tkrA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO55 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli (strain 55989 / EAEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO45 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO27 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_ECO24 (Glyoxylate/hydroxypyruvate reductase B OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ghrB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.716e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVV 241
[Close]
BLAST of FC931843 vs. ExPASy Swiss-Prot
Match: GHRB_SHIBS (Glyoxylate/hydroxypyruvate reductase B OS=Shigella boydii serotype 4 (strain Sb227) GN=ghrB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.241e-11
Identity = 48/171 (28.07%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  211 TASAGVNHIHMPECRRRGIAVANAGSIFSDDAADAAVGLLIDVWRKISSADRFLRQGLWS-KIGDYPLGSKLGGKRVGIVGLGNIGLQVAKRLQAFGCN--VLYNSRGK-KPVPYAFYSNVCELAA---NSDALIICCALTDQTRRMINREVMLALGKEGIIXNVGRGAVI 702
            T S G ++  +     R I + +  ++ ++  AD  + L++   R++      ++ G W+  IG    G+ +  K +GIVG+G IG+ +A+R   FG N  +LYN+R   K     F +  C+L      SD + +   LTD+T  +   E    +    I  N GRG V+
Sbjct:   72 TISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAH-FGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKPSAIFINAGRGPVV 241
The following BLAST results are available for this feature:
BLAST of FC931843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
GHRB_ECO8A1.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO811.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO7I1.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO5E1.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO571.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO551.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO451.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO271.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_ECO241.716e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Escheric... [more]
GHRB_SHIBS2.241e-1128.07Glyoxylate/hydroxypyruvate reductase B OS=Shigella... [more]

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Properties
Property NameValue
Genbank descriptionC34201G08EF PostHarveN Citrus clementina cDNA clone C34201G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC931843 ID=FC931843; Name=FC931843; organism=Citrus clementina; type=EST; length=703bp
CTTGTTATTAAACTTCCACCACCATTAACGCTATTTGGTGACAAGTTCAT
TTCGAGGAGTTTCCAACTCTCGAAAGCGTACGAATCGTCACTCTCACTCG
AGCAATTCTTGATTAGCCACGCGCATTCAATTGAAGCCATTCTATGCTCC
GGTGATTCTCCAGTCACGCTGGACATTCTCAGGCTGCTGCCAAAATTGCG
GCTCGTCGTCACTGCCAGCGCGGGCGTCAACCACATCCACATGCCCGAGT
GCCGCCGTCGTGGGATTGCTGTTGCTAATGCCGGGAGCATTTTCTCTGAC
GACGCTGCAGATGCCGCAGTGGGGTTGTTGATTGATGTTTGGAGAAAGAT
TTCTTCCGCTGACAGGTTTCTGAGACAAGGGCTTTGGTCTAAGATTGGGG
ACTATCCTCTTGGTTCTAAGTTGGGAGGCAAGCGAGTTGGGATTGTCGGA
CTGGGAAACATTGGCTTACAAGTTGCTAAAAGGCTGCAAGCATTTGGCTG
CAATGTGCTATACAATTCAAGGGGCAAGAAGCCAGTACCATACGCCTTCT
ATTCAAATGTTTGTGAACTAGCAGCTAATAGCGATGCCCTCATCATTTGT
TGTGCGCTAACTGATCAAACACGCCGCATGATTAACAGAGAAGTGATGCT
GGCATTGGGGAAGGAAGGCATAATTGNTAATGTCGGACGCGGGGCTGTTA
TTG
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